miRNA display CGI


Results 61 - 80 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 105102 0.7 0.758278
Target:  5'- gCugGaCCCGGACCCGggACUgCGCGGu -3'
miRNA:   3'- -GugCaGGGUCUGGGCagUGA-GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 106035 0.67 0.920728
Target:  5'- aACG-CUCAuaauCCCGUCGC-CGCGGGc -3'
miRNA:   3'- gUGCaGGGUcu--GGGCAGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 106762 0.67 0.891615
Target:  5'- cCGCGUCCgGcucucGGCCCGcggCACUgGuCGGGg -3'
miRNA:   3'- -GUGCAGGgU-----CUGGGCa--GUGAgU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 108608 0.66 0.925405
Target:  5'- gGCGgCCgCGGGCCCGUCccgucucucguuACUCuccuccaggaccaGCGGGa -3'
miRNA:   3'- gUGCaGG-GUCUGGGCAG------------UGAG-------------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 109060 0.66 0.940187
Target:  5'- gACGa-CCGGACCCGcCGCgUCcCGGGu -3'
miRNA:   3'- gUGCagGGUCUGGGCaGUG-AGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 111345 0.67 0.9027
Target:  5'- gGCGUCCCGGGCgCG-CACgaggacgaccCGGGg -3'
miRNA:   3'- gUGCAGGGUCUGgGCaGUGagu-------GCCC- -5'
9037 5' -57.6 NC_002512.2 + 111768 0.67 0.897856
Target:  5'- uCACGUCgCCAGGgagcCCCGcugggaCGCcCACGGGu -3'
miRNA:   3'- -GUGCAG-GGUCU----GGGCa-----GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 112281 0.66 0.925914
Target:  5'- gAUGUCCCGGuucuCCuuCGUCACgauCGGGu -3'
miRNA:   3'- gUGCAGGGUCu---GG--GCAGUGaguGCCC- -5'
9037 5' -57.6 NC_002512.2 + 113994 0.7 0.784918
Target:  5'- cCAgGUCCCGGAUCCGgUugUCgucguccgGCGGGc -3'
miRNA:   3'- -GUgCAGGGUCUGGGCaGugAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 114099 0.68 0.878523
Target:  5'- gACGUCCCAG--UCGUCGCaguagCACGGc -3'
miRNA:   3'- gUGCAGGGUCugGGCAGUGa----GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 114159 0.66 0.944519
Target:  5'- gACGaCCCGGGCCCgGUC-CUCcuCGGu -3'
miRNA:   3'- gUGCaGGGUCUGGG-CAGuGAGu-GCCc -5'
9037 5' -57.6 NC_002512.2 + 116670 0.68 0.850015
Target:  5'- -cCGUCUCcccgggcgaGGACCCGgcuccCGCUCGCGGa -3'
miRNA:   3'- guGCAGGG---------UCUGGGCa----GUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 117094 0.71 0.73074
Target:  5'- uGCGggccgCCCuGGACCCGgCACagcggCACGGGg -3'
miRNA:   3'- gUGCa----GGG-UCUGGGCaGUGa----GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 117887 0.67 0.920728
Target:  5'- gACG-CCgGgGGCCCGUCGCUgcucCACGGc -3'
miRNA:   3'- gUGCaGGgU-CUGGGCAGUGA----GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 118588 0.78 0.374799
Target:  5'- gCugGUCCCAGACCCcgggcGUCugGC-CGCGGGa -3'
miRNA:   3'- -GugCAGGGUCUGGG-----CAG--UGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 118640 0.67 0.915328
Target:  5'- cCGCGUgCC--GCCCGaCGCUC-CGGGc -3'
miRNA:   3'- -GUGCAgGGucUGGGCaGUGAGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 119076 0.66 0.944519
Target:  5'- -cUGUCCCucGACCgGUCGCgcgaggaggUGCGGGc -3'
miRNA:   3'- guGCAGGGu-CUGGgCAGUGa--------GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 120576 0.68 0.865357
Target:  5'- aCACGUCCCccGACCCGaccuucugcguccccCACggcUACGGGa -3'
miRNA:   3'- -GUGCAGGGu-CUGGGCa--------------GUGa--GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 120810 0.67 0.891615
Target:  5'- gGCGgucUCUCGGACCCGggaCGCg-GCGGGu -3'
miRNA:   3'- gUGC---AGGGUCUGGGCa--GUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 121937 0.81 0.236717
Target:  5'- gGCgGUCCCGGACCCGcggcgaugauguUCGCUCACGGu -3'
miRNA:   3'- gUG-CAGGGUCUGGGC------------AGUGAGUGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.