miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 220397 0.7 0.784918
Target:  5'- -cCGUCgUcuACCCGcCGCUCGCGGGc -3'
miRNA:   3'- guGCAGgGucUGGGCaGUGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 8038 0.7 0.784918
Target:  5'- gAgGUCCCGGuCCCGagGCgccccCGCGGGu -3'
miRNA:   3'- gUgCAGGGUCuGGGCagUGa----GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 113994 0.7 0.784918
Target:  5'- cCAgGUCCCGGAUCCGgUugUCgucguccgGCGGGc -3'
miRNA:   3'- -GUgCAGGGUCUGGGCaGugAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 102352 0.7 0.793561
Target:  5'- gCGCGUCCUcGGCCUG-CAgUCuCGGGa -3'
miRNA:   3'- -GUGCAGGGuCUGGGCaGUgAGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 37020 0.7 0.793561
Target:  5'- uGCGUCCCcggGGACCacuGUCACU--CGGGu -3'
miRNA:   3'- gUGCAGGG---UCUGGg--CAGUGAguGCCC- -5'
9037 5' -57.6 NC_002512.2 + 94620 0.7 0.793561
Target:  5'- gGCGgCCCAGGCCuCGUCgaGCgcggCGCGGa -3'
miRNA:   3'- gUGCaGGGUCUGG-GCAG--UGa---GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 208067 0.7 0.793561
Target:  5'- uCGCGcuuUCUCGGGCCCGUCGCUgACu-- -3'
miRNA:   3'- -GUGC---AGGGUCUGGGCAGUGAgUGccc -5'
9037 5' -57.6 NC_002512.2 + 91989 0.7 0.793561
Target:  5'- cCGCGUCCgGGucucCCgCGUCgccggcggcggACUCGCGGGc -3'
miRNA:   3'- -GUGCAGGgUCu---GG-GCAG-----------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 144699 0.69 0.802074
Target:  5'- gGCGaCCCacgGGACCCGUCGCgCcUGGGu -3'
miRNA:   3'- gUGCaGGG---UCUGGGCAGUGaGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 142205 0.69 0.802074
Target:  5'- gCGCGUCCCGucggucucGACgUCGUCGCcuUCGCGGa -3'
miRNA:   3'- -GUGCAGGGU--------CUG-GGCAGUG--AGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 43230 0.69 0.810449
Target:  5'- gACGUCCUcccggagcuGGGCCCaGUgGCcCGCGGGc -3'
miRNA:   3'- gUGCAGGG---------UCUGGG-CAgUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 206985 0.69 0.810449
Target:  5'- -cCG-CCCGGgauGCCCGUgGCcCGCGGGg -3'
miRNA:   3'- guGCaGGGUC---UGGGCAgUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 220112 0.69 0.81868
Target:  5'- gGCGUCCguGAgCCGcCAC--GCGGGg -3'
miRNA:   3'- gUGCAGGguCUgGGCaGUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 128272 0.69 0.824351
Target:  5'- uCGCGUCCCggcgccgggccgacGGccGCCCG-CACgacCGCGGGg -3'
miRNA:   3'- -GUGCAGGG--------------UC--UGGGCaGUGa--GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 41778 0.69 0.825957
Target:  5'- aGCGUCUguGAuCCCGUCGCcgauugaUC-CGGGu -3'
miRNA:   3'- gUGCAGGguCU-GGGCAGUG-------AGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 145643 0.69 0.826758
Target:  5'- cCGCGUCgagaugCCGGGCCCG-CGCUCGCu-- -3'
miRNA:   3'- -GUGCAG------GGUCUGGGCaGUGAGUGccc -5'
9037 5' -57.6 NC_002512.2 + 170732 0.69 0.826758
Target:  5'- aCGgGUUCCAGGCCCGguacaucgacaUC-CUCGcCGGGa -3'
miRNA:   3'- -GUgCAGGGUCUGGGC-----------AGuGAGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 138955 0.69 0.826758
Target:  5'- gCACGcCCCGGucgcGCCCGUCAg-CAUGGa -3'
miRNA:   3'- -GUGCaGGGUC----UGGGCAGUgaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 76914 0.69 0.837799
Target:  5'- gCGCGUCCacuuuauaagaagaGGACCC--CGCUCGCGGa -3'
miRNA:   3'- -GUGCAGGg-------------UCUGGGcaGUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 199633 0.69 0.842432
Target:  5'- gCGCGUCCgCggGGACCCGUUuCcCGCGGa -3'
miRNA:   3'- -GUGCAGG-G--UCUGGGCAGuGaGUGCCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.