Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 210466 | 0.66 | 0.944519 |
Target: 5'- uGCGUCCC-GAUCUGUCuCUCGaGGa -3' miRNA: 3'- gUGCAGGGuCUGGGCAGuGAGUgCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 59277 | 0.66 | 0.944519 |
Target: 5'- cCACGUCCguGACgUCGU-GCUCgACGGa -3' miRNA: 3'- -GUGCAGGguCUG-GGCAgUGAG-UGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 227410 | 0.66 | 0.944519 |
Target: 5'- -cCG-CCCGGACCUacucUCGCgCGCGGGc -3' miRNA: 3'- guGCaGGGUCUGGGc---AGUGaGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 134199 | 0.67 | 0.897856 |
Target: 5'- -cCGUCCCcgccggAGGCCCGgcggacgcgCGCUCACGa- -3' miRNA: 3'- guGCAGGG------UCUGGGCa--------GUGAGUGCcc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 138785 | 0.67 | 0.920728 |
Target: 5'- aGCG-CCaCGGGCCCGUCcucCUCGCGc- -3' miRNA: 3'- gUGCaGG-GUCUGGGCAGu--GAGUGCcc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 39142 | 0.67 | 0.920728 |
Target: 5'- aGCGUCCCGGcCuCCGagAUcagUACGGGg -3' miRNA: 3'- gUGCAGGGUCuG-GGCagUGa--GUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 118640 | 0.67 | 0.915328 |
Target: 5'- cCGCGUgCC--GCCCGaCGCUC-CGGGc -3' miRNA: 3'- -GUGCAgGGucUGGGCaGUGAGuGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 24676 | 0.67 | 0.915328 |
Target: 5'- -cCGUCCCGGGCC----GCUCggGCGGGg -3' miRNA: 3'- guGCAGGGUCUGGgcagUGAG--UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 24901 | 0.67 | 0.90389 |
Target: 5'- cCGCcUUCCGGucCCCGUCGCcCGCGGc -3' miRNA: 3'- -GUGcAGGGUCu-GGGCAGUGaGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 63948 | 0.67 | 0.90389 |
Target: 5'- gGCGUCCUucugguAGACCCGaCACaUGCGGu -3' miRNA: 3'- gUGCAGGG------UCUGGGCaGUGaGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 18561 | 0.67 | 0.90389 |
Target: 5'- aGCG-CCCGGGCCCGgacCGC-CACGa- -3' miRNA: 3'- gUGCaGGGUCUGGGCa--GUGaGUGCcc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 21302 | 0.67 | 0.897856 |
Target: 5'- -uCGUCCCGGACCCGcugCGCgUCGagcuCGGc -3' miRNA: 3'- guGCAGGGUCUGGGCa--GUG-AGU----GCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 3693 | 0.67 | 0.897856 |
Target: 5'- -cCGUCCCcgacggaggucGACCCgGUCGCUCccCGGGu -3' miRNA: 3'- guGCAGGGu----------CUGGG-CAGUGAGu-GCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 111768 | 0.67 | 0.897856 |
Target: 5'- uCACGUCgCCAGGgagcCCCGcugggaCGCcCACGGGu -3' miRNA: 3'- -GUGCAG-GGUCU----GGGCa-----GUGaGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 9755 | 0.67 | 0.897242 |
Target: 5'- gGCGgagCCGGACCCGcCgccccgcguggcgGCUCACGGa -3' miRNA: 3'- gUGCag-GGUCUGGGCaG-------------UGAGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 120810 | 0.67 | 0.891615 |
Target: 5'- gGCGgucUCUCGGACCCGggaCGCg-GCGGGu -3' miRNA: 3'- gUGC---AGGGUCUGGGCa--GUGagUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 106762 | 0.67 | 0.891615 |
Target: 5'- cCGCGUCCgGcucucGGCCCGcggCACUgGuCGGGg -3' miRNA: 3'- -GUGCAGGgU-----CUGGGCa--GUGAgU-GCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 78878 | 0.67 | 0.891615 |
Target: 5'- uCGCGUCgCCauggagaccgAGACCCGUCAaUCAgCGGu -3' miRNA: 3'- -GUGCAG-GG----------UCUGGGCAGUgAGU-GCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 61103 | 0.67 | 0.891615 |
Target: 5'- aCACcugCCUGGACCUGUCGCcgUACGGc -3' miRNA: 3'- -GUGca-GGGUCUGGGCAGUGa-GUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 31873 | 0.67 | 0.891615 |
Target: 5'- gCGCGUCCCucgccCCCGUCcgucgcccGCUCGCGa- -3' miRNA: 3'- -GUGCAGGGucu--GGGCAG--------UGAGUGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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