Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 102352 | 0.7 | 0.793561 |
Target: 5'- gCGCGUCCUcGGCCUG-CAgUCuCGGGa -3' miRNA: 3'- -GUGCAGGGuCUGGGCaGUgAGuGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 37020 | 0.7 | 0.793561 |
Target: 5'- uGCGUCCCcggGGACCacuGUCACU--CGGGu -3' miRNA: 3'- gUGCAGGG---UCUGGg--CAGUGAguGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 113994 | 0.7 | 0.784918 |
Target: 5'- cCAgGUCCCGGAUCCGgUugUCgucguccgGCGGGc -3' miRNA: 3'- -GUgCAGGGUCUGGGCaGugAG--------UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 8038 | 0.7 | 0.784918 |
Target: 5'- gAgGUCCCGGuCCCGagGCgccccCGCGGGu -3' miRNA: 3'- gUgCAGGGUCuGGGCagUGa----GUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 127547 | 0.7 | 0.767269 |
Target: 5'- gACG-CCCGGACCCG--GCUCGucgucCGGGa -3' miRNA: 3'- gUGCaGGGUCUGGGCagUGAGU-----GCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 175248 | 0.7 | 0.767269 |
Target: 5'- cCAuCGUCgCCAGGgCCG-CGCUCGgCGGGu -3' miRNA: 3'- -GU-GCAG-GGUCUgGGCaGUGAGU-GCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 72852 | 0.7 | 0.767269 |
Target: 5'- cCGgGUCCUcgcuccGGGCCgCGUCGCcguugUCGCGGGg -3' miRNA: 3'- -GUgCAGGG------UCUGG-GCAGUG-----AGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 53091 | 0.7 | 0.776151 |
Target: 5'- gACG-CCCAgGACCCGU---UCGCGGGc -3' miRNA: 3'- gUGCaGGGU-CUGGGCAgugAGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 170732 | 0.69 | 0.826758 |
Target: 5'- aCGgGUUCCAGGCCCGguacaucgacaUC-CUCGcCGGGa -3' miRNA: 3'- -GUgCAGGGUCUGGGC-----------AGuGAGU-GCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 220112 | 0.69 | 0.81868 |
Target: 5'- gGCGUCCguGAgCCGcCAC--GCGGGg -3' miRNA: 3'- gUGCAGGguCUgGGCaGUGagUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 206985 | 0.69 | 0.810449 |
Target: 5'- -cCG-CCCGGgauGCCCGUgGCcCGCGGGg -3' miRNA: 3'- guGCaGGGUC---UGGGCAgUGaGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 144699 | 0.69 | 0.802074 |
Target: 5'- gGCGaCCCacgGGACCCGUCGCgCcUGGGu -3' miRNA: 3'- gUGCaGGG---UCUGGGCAGUGaGuGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 145643 | 0.69 | 0.826758 |
Target: 5'- cCGCGUCgagaugCCGGGCCCG-CGCUCGCu-- -3' miRNA: 3'- -GUGCAG------GGUCUGGGCaGUGAGUGccc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 41778 | 0.69 | 0.825957 |
Target: 5'- aGCGUCUguGAuCCCGUCGCcgauugaUC-CGGGu -3' miRNA: 3'- gUGCAGGguCU-GGGCAGUG-------AGuGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 128272 | 0.69 | 0.824351 |
Target: 5'- uCGCGUCCCggcgccgggccgacGGccGCCCG-CACgacCGCGGGg -3' miRNA: 3'- -GUGCAGGG--------------UC--UGGGCaGUGa--GUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 199633 | 0.69 | 0.842432 |
Target: 5'- gCGCGUCCgCggGGACCCGUUuCcCGCGGa -3' miRNA: 3'- -GUGCAGG-G--UCUGGGCAGuGaGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 76914 | 0.69 | 0.837799 |
Target: 5'- gCGCGUCCacuuuauaagaagaGGACCC--CGCUCGCGGa -3' miRNA: 3'- -GUGCAGGg-------------UCUGGGcaGUGAGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 142205 | 0.69 | 0.802074 |
Target: 5'- gCGCGUCCCGucggucucGACgUCGUCGCcuUCGCGGa -3' miRNA: 3'- -GUGCAGGGU--------CUG-GGCAGUG--AGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 43230 | 0.69 | 0.810449 |
Target: 5'- gACGUCCUcccggagcuGGGCCCaGUgGCcCGCGGGc -3' miRNA: 3'- gUGCAGGG---------UCUGGG-CAgUGaGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 138955 | 0.69 | 0.826758 |
Target: 5'- gCACGcCCCGGucgcGCCCGUCAg-CAUGGa -3' miRNA: 3'- -GUGCaGGGUC----UGGGCAGUgaGUGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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