Results 21 - 40 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 127637 | 0.66 | 0.925914 |
Target: 5'- gACG-CCCGGACCCGg-GC-C-CGGGu -3' miRNA: 3'- gUGCaGGGUCUGGGCagUGaGuGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 112281 | 0.66 | 0.925914 |
Target: 5'- gAUGUCCCGGuucuCCuuCGUCACgauCGGGu -3' miRNA: 3'- gUGCAGGGUCu---GG--GCAGUGaguGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 208677 | 0.66 | 0.930886 |
Target: 5'- gGCGUCCCgGGGgCCG-CugUCccuggACGGGu -3' miRNA: 3'- gUGCAGGG-UCUgGGCaGugAG-----UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 128421 | 0.66 | 0.930886 |
Target: 5'- gGgGUCgCCGGAgCCC-UC-CUCGCGGGc -3' miRNA: 3'- gUgCAG-GGUCU-GGGcAGuGAGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 150394 | 0.66 | 0.940187 |
Target: 5'- gGCGUCCCcccucCCCGaacCGCcCACGGGc -3' miRNA: 3'- gUGCAGGGucu--GGGCa--GUGaGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 92600 | 0.66 | 0.930886 |
Target: 5'- gGCgGUCCCgAGGCCgGUCGCgacgACGGa -3' miRNA: 3'- gUG-CAGGG-UCUGGgCAGUGag--UGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 226472 | 0.66 | 0.925914 |
Target: 5'- gGCGggaggaggCCgGGGCCCGggCGCUCcccucgccGCGGGu -3' miRNA: 3'- gUGCa-------GGgUCUGGGCa-GUGAG--------UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 104884 | 0.66 | 0.940187 |
Target: 5'- gGCGUCCCuGGCCCcgaugCACUCcgacgcccuGCaGGGc -3' miRNA: 3'- gUGCAGGGuCUGGGca---GUGAG---------UG-CCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 181657 | 0.66 | 0.930886 |
Target: 5'- cCGCGUCCCGGuACagguaGUCGCgcccCGCGGc -3' miRNA: 3'- -GUGCAGGGUC-UGgg---CAGUGa---GUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 196861 | 0.66 | 0.930886 |
Target: 5'- cUACGaCCU--GCCCGUCGCUCugccGCGGa -3' miRNA: 3'- -GUGCaGGGucUGGGCAGUGAG----UGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 109060 | 0.66 | 0.940187 |
Target: 5'- gACGa-CCGGACCCGcCGCgUCcCGGGu -3' miRNA: 3'- gUGCagGGUCUGGGCaGUG-AGuGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 74435 | 0.66 | 0.930886 |
Target: 5'- gACgGUCCCGG-CgCGUCGCUCACc-- -3' miRNA: 3'- gUG-CAGGGUCuGgGCAGUGAGUGccc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 25007 | 0.66 | 0.925914 |
Target: 5'- -cCGUCCgAGAgcuCgCCGUCGgUCGCGGa -3' miRNA: 3'- guGCAGGgUCU---G-GGCAGUgAGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 122279 | 0.66 | 0.925914 |
Target: 5'- gACGUCCUGGAgCCCGUCAgCgagccgCACGu- -3' miRNA: 3'- gUGCAGGGUCU-GGGCAGU-Ga-----GUGCcc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 150154 | 0.66 | 0.925914 |
Target: 5'- gGCGUCcgCCAG-CCCGUC-CUCGCucucccugccGGGc -3' miRNA: 3'- gUGCAG--GGUCuGGGCAGuGAGUG----------CCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 225515 | 0.66 | 0.940187 |
Target: 5'- gGgGUCCCGGGCU--UCGCggACGGGa -3' miRNA: 3'- gUgCAGGGUCUGGgcAGUGagUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 108608 | 0.66 | 0.925405 |
Target: 5'- gGCGgCCgCGGGCCCGUCccgucucucguuACUCuccuccaggaccaGCGGGa -3' miRNA: 3'- gUGCaGG-GUCUGGGCAG------------UGAG-------------UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 100326 | 0.66 | 0.930886 |
Target: 5'- cCACGgccUCCCGGGCCuCGUCgACgccCAauaGGGa -3' miRNA: 3'- -GUGC---AGGGUCUGG-GCAG-UGa--GUg--CCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 94257 | 0.66 | 0.935643 |
Target: 5'- gGCGaCCCGGACCCccgagaACUCGCuGGc -3' miRNA: 3'- gUGCaGGGUCUGGGcag---UGAGUGcCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 152554 | 0.66 | 0.941945 |
Target: 5'- aACGcCCCGGGucaggagcccgagacCCCGUCGcCUCGCGa- -3' miRNA: 3'- gUGCaGGGUCU---------------GGGCAGU-GAGUGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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