miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 115864 0.66 0.88988
Target:  5'- cCACCg-CG-CCCGGugccgcuGCGGGGCcgacgGCGGCg -3'
miRNA:   3'- -GUGGaaGCaGGGCC-------UGUCUCG-----CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 130452 0.66 0.884035
Target:  5'- uCGCCa-CGUCCCGG-CuGAGCGUccugGGUc -3'
miRNA:   3'- -GUGGaaGCAGGGCCuGuCUCGCG----CCG- -5'
9045 3' -58.9 NC_002512.2 + 11107 0.66 0.884035
Target:  5'- cCGCCUcggccUCGUcCCCGGACGGGGaaccgaggagucCGagGGCc -3'
miRNA:   3'- -GUGGA-----AGCA-GGGCCUGUCUC------------GCg-CCG- -5'
9045 3' -58.9 NC_002512.2 + 2199 0.66 0.884035
Target:  5'- cCGCCgucgUCGUCUCGGucgcCGGcGGCGCcGCc -3'
miRNA:   3'- -GUGGa---AGCAGGGCCu---GUC-UCGCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 212039 0.66 0.884034
Target:  5'- gCACCg-CG-CCCGGGaGGAGCuGCuGGCg -3'
miRNA:   3'- -GUGGaaGCaGGGCCUgUCUCG-CG-CCG- -5'
9045 3' -58.9 NC_002512.2 + 169008 0.66 0.884034
Target:  5'- gCGCCggcUCGgcgaUCCGGGCGGgcguccgcgagcGGCGcCGGCa -3'
miRNA:   3'- -GUGGa--AGCa---GGGCCUGUC------------UCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 166071 0.66 0.884034
Target:  5'- gCACCgUCGUCCUGGACAuGuacccCGUGuGCu -3'
miRNA:   3'- -GUGGaAGCAGGGCCUGU-Cuc---GCGC-CG- -5'
9045 3' -58.9 NC_002512.2 + 122027 0.66 0.884034
Target:  5'- gGCCUccacgCGgUCCGGACAGAagauccUGCGGCu -3'
miRNA:   3'- gUGGAa----GCaGGGCCUGUCUc-----GCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 144660 0.66 0.884034
Target:  5'- cCACCUguUCGcggUCCGGGC-GAGCGaggacgacgaccCGGCg -3'
miRNA:   3'- -GUGGA--AGCa--GGGCCUGuCUCGC------------GCCG- -5'
9045 3' -58.9 NC_002512.2 + 109840 0.66 0.884034
Target:  5'- cCGCCgggCGUCggGGACc-GGCGUGGCg -3'
miRNA:   3'- -GUGGaa-GCAGggCCUGucUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 58051 0.66 0.880047
Target:  5'- gGCCggacCGUCCCgcgguaccggaugccGGGCagcaGGAGCGCGcGCc -3'
miRNA:   3'- gUGGaa--GCAGGG---------------CCUG----UCUCGCGC-CG- -5'
9045 3' -58.9 NC_002512.2 + 133568 0.66 0.880047
Target:  5'- gCACCUgUCGUgcggcgaccggcccgCCCGcGGCGGcGGCccGCGGCa -3'
miRNA:   3'- -GUGGA-AGCA---------------GGGC-CUGUC-UCG--CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 217118 0.66 0.877349
Target:  5'- cCGCCga-GUCCUGcGGCGGcAGCaGCGGg -3'
miRNA:   3'- -GUGGaagCAGGGC-CUGUC-UCG-CGCCg -5'
9045 3' -58.9 NC_002512.2 + 189588 0.66 0.877349
Target:  5'- cCGCCgg-GUCCUcgGGACGacguucGuGCGCGGCg -3'
miRNA:   3'- -GUGGaagCAGGG--CCUGU------CuCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 227764 0.66 0.877349
Target:  5'- gACCgaacgcUCGacgCCCGcGACcGAGCcGCGGCc -3'
miRNA:   3'- gUGGa-----AGCa--GGGC-CUGuCUCG-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 99003 0.66 0.877349
Target:  5'- gGCCUcugCGcggCCCcGAUAGGGCGCgucGGCg -3'
miRNA:   3'- gUGGAa--GCa--GGGcCUGUCUCGCG---CCG- -5'
9045 3' -58.9 NC_002512.2 + 104688 0.66 0.877349
Target:  5'- -uCCUccgCGUCCUGGACggccaccuggaaGGGGC-CGGCc -3'
miRNA:   3'- guGGAa--GCAGGGCCUG------------UCUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 38438 0.66 0.877349
Target:  5'- cCACCUcaaCGcCCCGGGCGGAGUGa--- -3'
miRNA:   3'- -GUGGAa--GCaGGGCCUGUCUCGCgccg -5'
9045 3' -58.9 NC_002512.2 + 133207 0.66 0.875988
Target:  5'- uUAUCUUCGggacgucguccgCCCagcgaGGACgGGAGgGCGGCg -3'
miRNA:   3'- -GUGGAAGCa-----------GGG-----CCUG-UCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 199978 0.66 0.870467
Target:  5'- cCGCCgcguccgCGcgCCCGG-CGGGGacgaGCGGCc -3'
miRNA:   3'- -GUGGaa-----GCa-GGGCCuGUCUCg---CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.