miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 179442 0.66 0.8968
Target:  5'- gGCCggCGUCuuCUGGACAuccGGCGcCGGCc -3'
miRNA:   3'- gUGGaaGCAG--GGCCUGUc--UCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 159051 0.66 0.8968
Target:  5'- uCAUC-UCGUCCCGGGgcGAG-GCGGa -3'
miRNA:   3'- -GUGGaAGCAGGGCCUguCUCgCGCCg -5'
9045 3' -58.9 NC_002512.2 + 166782 0.66 0.8968
Target:  5'- -uCCUccCGUCCCGGACgaggacguucuGGAG-GUGGUg -3'
miRNA:   3'- guGGAa-GCAGGGCCUG-----------UCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 134161 0.66 0.8968
Target:  5'- gUACCcgUCGaCCCGGACccuG-GCGGCg -3'
miRNA:   3'- -GUGGa-AGCaGGGCCUGucuCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 126720 0.66 0.8968
Target:  5'- -uCC-UCGUCCUcGcCGG-GCGCGGCg -3'
miRNA:   3'- guGGaAGCAGGGcCuGUCuCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 35486 0.66 0.8968
Target:  5'- gACggUCGUgCCGuGGCGGAGCGUGcCa -3'
miRNA:   3'- gUGgaAGCAgGGC-CUGUCUCGCGCcG- -5'
9045 3' -58.9 NC_002512.2 + 204752 0.66 0.8968
Target:  5'- uGCUcagCGaUCCCGGcCuGGGGCGCGGg -3'
miRNA:   3'- gUGGaa-GC-AGGGCCuG-UCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 117058 0.66 0.8968
Target:  5'- uGCCgUUCGUgCCGGAgCAc-GCGCaGGCg -3'
miRNA:   3'- gUGG-AAGCAgGGCCU-GUcuCGCG-CCG- -5'
9045 3' -58.9 NC_002512.2 + 33505 0.66 0.8968
Target:  5'- gACCcgcggCGUCCCGaAguGAGCcCGGCc -3'
miRNA:   3'- gUGGaa---GCAGGGCcUguCUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 128009 0.66 0.8968
Target:  5'- gCGCUUUCG-CCCGcGGCu--GCuGCGGCc -3'
miRNA:   3'- -GUGGAAGCaGGGC-CUGucuCG-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 225721 0.66 0.896182
Target:  5'- uCGCCcgCGagCCGcGGCgacucgcucagucGGGGCGCGGCc -3'
miRNA:   3'- -GUGGaaGCagGGC-CUG-------------UCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 33004 0.66 0.896182
Target:  5'- aCGCCgUCGaugagcaUCCgCGG-CAGAGCGacgGGCa -3'
miRNA:   3'- -GUGGaAGC-------AGG-GCCuGUCUCGCg--CCG- -5'
9045 3' -58.9 NC_002512.2 + 7229 0.66 0.890519
Target:  5'- gCGCCccUCGgCCCGGcCGGccguCGCGGCg -3'
miRNA:   3'- -GUGGa-AGCaGGGCCuGUCuc--GCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 9203 0.66 0.890519
Target:  5'- gACCUcCGUCCCGucgcccaGCAcGA-CGCGGCg -3'
miRNA:   3'- gUGGAaGCAGGGCc------UGU-CUcGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 117233 0.66 0.890519
Target:  5'- gCACCUUCGUCUCcaAC-GA-CGCGGCc -3'
miRNA:   3'- -GUGGAAGCAGGGccUGuCUcGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 119763 0.66 0.890519
Target:  5'- gAUC-UCGUUCUGGucCGGGGUGUGGUa -3'
miRNA:   3'- gUGGaAGCAGGGCCu-GUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 210202 0.66 0.890519
Target:  5'- gACCgucugaUCGU-CCGaGACGGAGaCGCGGa -3'
miRNA:   3'- gUGGa-----AGCAgGGC-CUGUCUC-GCGCCg -5'
9045 3' -58.9 NC_002512.2 + 58183 0.66 0.890519
Target:  5'- cUACCggagUCGagaCgCUGGugAGugGGCGCGGCg -3'
miRNA:   3'- -GUGGa---AGCa--G-GGCCugUC--UCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 101625 0.66 0.890519
Target:  5'- gCGCCgggacgcgagUCGccgCUCGaGgGGAGCGCGGCg -3'
miRNA:   3'- -GUGGa---------AGCa--GGGCcUgUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 124688 0.66 0.890519
Target:  5'- gACC-UCGggaUCCGGGCgcacgccguccuGGGGCGCGuGCa -3'
miRNA:   3'- gUGGaAGCa--GGGCCUG------------UCUCGCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.