miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 138 0.74 0.473144
Target:  5'- aCGCCgggGagCCGGGCGGGGCGcCGGCg -3'
miRNA:   3'- -GUGGaagCagGGCCUGUCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 10468 0.74 0.482085
Target:  5'- cCGCCgcCGcCCCGGGCGuGGGCgucGCGGCg -3'
miRNA:   3'- -GUGGaaGCaGGGCCUGU-CUCG---CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 155876 0.73 0.500207
Target:  5'- aCGCUgUUCGUCCCcGACGGcgGGCGCGGg -3'
miRNA:   3'- -GUGG-AAGCAGGGcCUGUC--UCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 88975 0.73 0.50938
Target:  5'- cCGCCgcgUCGUCCCcgucgucGACccGGAGCGCGGg -3'
miRNA:   3'- -GUGGa--AGCAGGGc------CUG--UCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 201986 0.73 0.519551
Target:  5'- gUACCgauacgcgguguggcUCGUCUCGGACAGguGGCGgGGCc -3'
miRNA:   3'- -GUGGa--------------AGCAGGGCCUGUC--UCGCgCCG- -5'
9045 3' -58.9 NC_002512.2 + 36022 0.73 0.536363
Target:  5'- cCACCgccgCGUCCgauguacUGGGCAGAGCGgGGa -3'
miRNA:   3'- -GUGGaa--GCAGG-------GCCUGUCUCGCgCCg -5'
9045 3' -58.9 NC_002512.2 + 132565 0.73 0.537303
Target:  5'- cCGCCcUCGacCCCGG-CGG-GCGCGGCc -3'
miRNA:   3'- -GUGGaAGCa-GGGCCuGUCuCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 215739 0.73 0.537303
Target:  5'- gACCUUCGUCCCGcugcccaAGGGCuguuucuccaGCGGCa -3'
miRNA:   3'- gUGGAAGCAGGGCcug----UCUCG----------CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 204799 0.73 0.544841
Target:  5'- aCGCCcgggagguccgCGUCCCGG---GGGCGCGGCg -3'
miRNA:   3'- -GUGGaa---------GCAGGGCCuguCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 126746 0.73 0.54673
Target:  5'- uGCCUcUUGgCCCGaGACgccucGGGGCGCGGCg -3'
miRNA:   3'- gUGGA-AGCaGGGC-CUG-----UCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 75221 0.73 0.54673
Target:  5'- cCGCCgcguuaacgcCGUCgCGGugAcGAGCGCGGCc -3'
miRNA:   3'- -GUGGaa--------GCAGgGCCugU-CUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 181029 0.72 0.556209
Target:  5'- gGCCcgCGUCCUGGGCAGgaggccgcacAGC-CGGCa -3'
miRNA:   3'- gUGGaaGCAGGGCCUGUC----------UCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 15440 0.72 0.560014
Target:  5'- gGCC-UCGUCCUcgccgacguagacggGGACGcgguccucGGGCGCGGCg -3'
miRNA:   3'- gUGGaAGCAGGG---------------CCUGU--------CUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 21298 0.72 0.563827
Target:  5'- gACC-UCGUCCCGGACccgcugcgcgucGAGCuCGGCc -3'
miRNA:   3'- gUGGaAGCAGGGCCUGu-----------CUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 98165 0.72 0.565736
Target:  5'- uCGCCg-CGgUCUGGACGG-GCGCGGCg -3'
miRNA:   3'- -GUGGaaGCaGGGCCUGUCuCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 121995 0.72 0.565736
Target:  5'- aGCCUuuaUCGgcgCCCGGAggggcCGGAG-GCGGCg -3'
miRNA:   3'- gUGGA---AGCa--GGGCCU-----GUCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 108582 0.72 0.575303
Target:  5'- uCGCUgUgGUUCCGGGCGGAGaGCGGUc -3'
miRNA:   3'- -GUGGaAgCAGGGCCUGUCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 219302 0.72 0.583946
Target:  5'- cCGCUUcgUCGUCCgcggccaCGGGgAGAGCGuCGGCg -3'
miRNA:   3'- -GUGGA--AGCAGG-------GCCUgUCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 127071 0.72 0.594543
Target:  5'- uCAUCggguauccCGuUCCCGGAgCGGAGgGCGGCg -3'
miRNA:   3'- -GUGGaa------GC-AGGGCCU-GUCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 55533 0.72 0.594543
Target:  5'- gGCCaUCcgcaUCCCggcGGACgAGGGCGCGGCg -3'
miRNA:   3'- gUGGaAGc---AGGG---CCUG-UCUCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.