miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 147345 1.1 0.002459
Target:  5'- gCACCUUCGUCCCGGACAGAGCGCGGCc -3'
miRNA:   3'- -GUGGAAGCAGGGCCUGUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 112902 0.84 0.123473
Target:  5'- gGCCgUCGgcccgCCCGGACGGGGCGuCGGCg -3'
miRNA:   3'- gUGGaAGCa----GGGCCUGUCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 104763 0.82 0.165415
Target:  5'- uCGCCgUCGUCCCGGuCGGAcggcGCGUGGCg -3'
miRNA:   3'- -GUGGaAGCAGGGCCuGUCU----CGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 31651 0.78 0.27597
Target:  5'- -----cCGUCCCGGACGGcgcgGGCGCGGCc -3'
miRNA:   3'- guggaaGCAGGGCCUGUC----UCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 103428 0.78 0.282189
Target:  5'- aCGCCgucgaacgcgUCGUCCCGGuCcGAGCGCGGg -3'
miRNA:   3'- -GUGGa---------AGCAGGGCCuGuCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 91873 0.78 0.301508
Target:  5'- gGCCgcCGUCCggcgCGGGCGGcGGCGCGGCg -3'
miRNA:   3'- gUGGaaGCAGG----GCCUGUC-UCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 188916 0.78 0.301508
Target:  5'- gCGCggUCGgagagUCCCGGugGCGGGGCGCGGCg -3'
miRNA:   3'- -GUGgaAGC-----AGGGCC--UGUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 88439 0.77 0.33594
Target:  5'- aACCgcaggCGUCCCGGAcCAGcaGGCGgGGCa -3'
miRNA:   3'- gUGGaa---GCAGGGCCU-GUC--UCGCgCCG- -5'
9045 3' -58.9 NC_002512.2 + 123123 0.77 0.33594
Target:  5'- cCGCCgucggcggcCGUCCCgggGGACGGGGCGgCGGCg -3'
miRNA:   3'- -GUGGaa-------GCAGGG---CCUGUCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 216219 0.77 0.343161
Target:  5'- uCGCC-UCGUCCgGGAgcUGGAGcCGCGGCg -3'
miRNA:   3'- -GUGGaAGCAGGgCCU--GUCUC-GCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 25052 0.76 0.350494
Target:  5'- cCGCCgUCGuccUCCCGGACGGAGcCGCcGCg -3'
miRNA:   3'- -GUGGaAGC---AGGGCCUGUCUC-GCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 152691 0.76 0.373154
Target:  5'- gGCCggucUCGUcgcgucCCCGGuCGGGGUGCGGCg -3'
miRNA:   3'- gUGGa---AGCA------GGGCCuGUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 6383 0.76 0.373154
Target:  5'- cCGCCguggUCGUCgcgaCGGGCAGGGagGCGGCg -3'
miRNA:   3'- -GUGGa---AGCAGg---GCCUGUCUCg-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 15671 0.76 0.380926
Target:  5'- cCGCCUgaCGUCCCgGGGCAGcgGGCGCaGCg -3'
miRNA:   3'- -GUGGAa-GCAGGG-CCUGUC--UCGCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 62272 0.76 0.389598
Target:  5'- gCACCcgaucgaggaagaggUCGUCCCGGgcgucGCAGAG-GCGGCg -3'
miRNA:   3'- -GUGGa--------------AGCAGGGCC-----UGUCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 108740 0.75 0.396789
Target:  5'- gGCCUUC-UCgCGGagGCAGuGCGCGGCg -3'
miRNA:   3'- gUGGAAGcAGgGCC--UGUCuCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 162069 0.75 0.438251
Target:  5'- aGCCUgccguguuUCGUCCCGGugGGGGUGaccgcugaGGCc -3'
miRNA:   3'- gUGGA--------AGCAGGGCCugUCUCGCg-------CCG- -5'
9045 3' -58.9 NC_002512.2 + 84208 0.74 0.444252
Target:  5'- aGCCacUCGUCCgCGGACAggcagacgaagagcGAGCGCGGg -3'
miRNA:   3'- gUGGa-AGCAGG-GCCUGU--------------CUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 138 0.74 0.473144
Target:  5'- aCGCCgggGagCCGGGCGGGGCGcCGGCg -3'
miRNA:   3'- -GUGGaagCagGGCCUGUCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 229541 0.74 0.473144
Target:  5'- aCGCCgggGagCCGGGCGGGGCGcCGGCg -3'
miRNA:   3'- -GUGGaagCagGGCCUGUCUCGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.