miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 138 0.74 0.473144
Target:  5'- aCGCCgggGagCCGGGCGGGGCGcCGGCg -3'
miRNA:   3'- -GUGGaagCagGGCCUGUCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 1956 0.7 0.691183
Target:  5'- cCGCC-UCGUCcgCCGGcguCGGAG-GCGGCg -3'
miRNA:   3'- -GUGGaAGCAG--GGCCu--GUCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 2199 0.66 0.884035
Target:  5'- cCGCCgucgUCGUCUCGGucgcCGGcGGCGCcGCc -3'
miRNA:   3'- -GUGGa---AGCAGGGCCu---GUC-UCGCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 2809 0.69 0.765629
Target:  5'- gGCCggCGggaCCCGGcGCGG-GCGCGGg -3'
miRNA:   3'- gUGGaaGCa--GGGCC-UGUCuCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 6383 0.76 0.373154
Target:  5'- cCGCCguggUCGUCgcgaCGGGCAGGGagGCGGCg -3'
miRNA:   3'- -GUGGa---AGCAGg---GCCUGUCUCg-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 7229 0.66 0.890519
Target:  5'- gCGCCccUCGgCCCGGcCGGccguCGCGGCg -3'
miRNA:   3'- -GUGGa-AGCaGGGCCuGUCuc--GCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 7588 0.67 0.824524
Target:  5'- cCGCCUccggcggcagcggUCGUagagguagcgCCCGaGCAGGGCGCaGGCc -3'
miRNA:   3'- -GUGGA-------------AGCA----------GGGCcUGUCUCGCG-CCG- -5'
9045 3' -58.9 NC_002512.2 + 9203 0.66 0.890519
Target:  5'- gACCUcCGUCCCGucgcccaGCAcGA-CGCGGCg -3'
miRNA:   3'- gUGGAaGCAGGGCc------UGU-CUcGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 10204 0.69 0.764732
Target:  5'- -uCCUccUCGUCCuCGGGCGGcGCGCccagaucccgacgGGCg -3'
miRNA:   3'- guGGA--AGCAGG-GCCUGUCuCGCG-------------CCG- -5'
9045 3' -58.9 NC_002512.2 + 10428 0.7 0.691183
Target:  5'- gACCgcgUCGUCgccgUCGGGCacgGGGGCGCGGa -3'
miRNA:   3'- gUGGa--AGCAG----GGCCUG---UCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 10468 0.74 0.482085
Target:  5'- cCGCCgcCGcCCCGGGCGuGGGCgucGCGGCg -3'
miRNA:   3'- -GUGGaaGCaGGGCCUGU-CUCG---CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 10957 0.67 0.825328
Target:  5'- aCGCCggCGcCCuCGGGCcaGGCaGCGGCa -3'
miRNA:   3'- -GUGGaaGCaGG-GCCUGucUCG-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 11107 0.66 0.884035
Target:  5'- cCGCCUcggccUCGUcCCCGGACGGGGaaccgaggagucCGagGGCc -3'
miRNA:   3'- -GUGGA-----AGCA-GGGCCUGUCUC------------GCg-CCG- -5'
9045 3' -58.9 NC_002512.2 + 13469 0.7 0.671975
Target:  5'- aGCCUggCGUcCCCGGACcu-GCuGCGGCc -3'
miRNA:   3'- gUGGAa-GCA-GGGCCUGucuCG-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 13642 0.69 0.763834
Target:  5'- gCACCUgaugacgaccgucUCGccgcggcuccagcUCCCGGACGaGGCGaCGGCc -3'
miRNA:   3'- -GUGGA-------------AGC-------------AGGGCCUGUcUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 15440 0.72 0.560014
Target:  5'- gGCC-UCGUCCUcgccgacguagacggGGACGcgguccucGGGCGCGGCg -3'
miRNA:   3'- gUGGaAGCAGGG---------------CCUGU--------CUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 15671 0.76 0.380926
Target:  5'- cCGCCUgaCGUCCCgGGGCAGcgGGCGCaGCg -3'
miRNA:   3'- -GUGGAa-GCAGGG-CCUGUC--UCGCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 16680 0.68 0.774537
Target:  5'- gACCcggCgGUCCCaGAcCAGGGUGUGGCg -3'
miRNA:   3'- gUGGaa-G-CAGGGcCU-GUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 21298 0.72 0.563827
Target:  5'- gACC-UCGUCCCGGACccgcugcgcgucGAGCuCGGCc -3'
miRNA:   3'- gUGGaAGCAGGGCCUGu-----------CUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 23080 0.69 0.719644
Target:  5'- uCACCc-CGUUCCGGAuccCGGAGUuCGGCg -3'
miRNA:   3'- -GUGGaaGCAGGGCCU---GUCUCGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.