miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 229541 0.74 0.473144
Target:  5'- aCGCCgggGagCCGGGCGGGGCGcCGGCg -3'
miRNA:   3'- -GUGGaagCagGGCCUGUCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 228119 0.68 0.808954
Target:  5'- gGCCgcaacgUCGUgCUGGGCGccgacGGGCGCGaGCu -3'
miRNA:   3'- gUGGa-----AGCAgGGCCUGU-----CUCGCGC-CG- -5'
9045 3' -58.9 NC_002512.2 + 227764 0.66 0.877349
Target:  5'- gACCgaacgcUCGacgCCCGcGACcGAGCcGCGGCc -3'
miRNA:   3'- gUGGa-----AGCa--GGGC-CUGuCUCG-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 227653 0.66 0.902874
Target:  5'- gCGCC--CGggUCCGGAggaAGAGCGgCGGCg -3'
miRNA:   3'- -GUGGaaGCa-GGGCCUg--UCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 227449 0.66 0.870467
Target:  5'- uCACCUUCGcgcugCCgGGGgAGAGgccggggGCGGCc -3'
miRNA:   3'- -GUGGAAGCa----GGgCCUgUCUCg------CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 227255 0.67 0.863394
Target:  5'- gUACCUuaUCGUCUgCGucauGGCAGGGCG-GGCg -3'
miRNA:   3'- -GUGGA--AGCAGG-GC----CUGUCUCGCgCCG- -5'
9045 3' -58.9 NC_002512.2 + 226572 0.67 0.84869
Target:  5'- gGCUcgCGcucCCCGGcCAGgagGGCGCGGCc -3'
miRNA:   3'- gUGGaaGCa--GGGCCuGUC---UCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 225721 0.66 0.896182
Target:  5'- uCGCCcgCGagCCGcGGCgacucgcucagucGGGGCGCGGCc -3'
miRNA:   3'- -GUGGaaGCagGGC-CUG-------------UCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 224575 0.68 0.774537
Target:  5'- cCACCg-CGgcuaCCCGGGuuacguCAGGGCGCGGg -3'
miRNA:   3'- -GUGGaaGCa---GGGCCU------GUCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 222849 0.7 0.691183
Target:  5'- uGCCgcUUCGUCCCGaacGAC-GAGCcCGGCa -3'
miRNA:   3'- gUGG--AAGCAGGGC---CUGuCUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 221434 0.67 0.833282
Target:  5'- cCGCCaugCGgaCCgCGGcCGGGGCGCGGUc -3'
miRNA:   3'- -GUGGaa-GCa-GG-GCCuGUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 221359 0.71 0.612912
Target:  5'- uCGCCgcuccgugUCGgugguguguccucUCCuCGGGCGGGGCGCGGg -3'
miRNA:   3'- -GUGGa-------AGC-------------AGG-GCCUGUCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 221143 0.71 0.604202
Target:  5'- gACCgcguccccgUCGUCgaCGGGCGGGcgcGCGCGGCc -3'
miRNA:   3'- gUGGa--------AGCAGg-GCCUGUCU---CGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 219302 0.72 0.583946
Target:  5'- cCGCUUcgUCGUCCgcggccaCGGGgAGAGCGuCGGCg -3'
miRNA:   3'- -GUGGA--AGCAGG-------GCCUgUCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 219254 0.66 0.870467
Target:  5'- cCGCCUcuggcugcUCGU-CCGG-CAGGGgGCGGa -3'
miRNA:   3'- -GUGGA--------AGCAgGGCCuGUCUCgCGCCg -5'
9045 3' -58.9 NC_002512.2 + 218215 0.68 0.800548
Target:  5'- cCGCC-UCGggCCGcGGCGGGcCGCGGCg -3'
miRNA:   3'- -GUGGaAGCagGGC-CUGUCUcGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 217118 0.66 0.877349
Target:  5'- cCGCCga-GUCCUGcGGCGGcAGCaGCGGg -3'
miRNA:   3'- -GUGGaagCAGGGC-CUGUC-UCG-CGCCg -5'
9045 3' -58.9 NC_002512.2 + 216219 0.77 0.343161
Target:  5'- uCGCC-UCGUCCgGGAgcUGGAGcCGCGGCg -3'
miRNA:   3'- -GUGGaAGCAGGgCCU--GUCUC-GCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 215739 0.73 0.537303
Target:  5'- gACCUUCGUCCCGcugcccaAGGGCuguuucuccaGCGGCa -3'
miRNA:   3'- gUGGAAGCAGGGCcug----UCUCG----------CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 215603 0.69 0.7475
Target:  5'- aCAgCgUCGUCCgGGucuGCGGcAGCGUGGCc -3'
miRNA:   3'- -GUgGaAGCAGGgCC---UGUC-UCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.