miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 11107 0.66 0.884035
Target:  5'- cCGCCUcggccUCGUcCCCGGACGGGGaaccgaggagucCGagGGCc -3'
miRNA:   3'- -GUGGA-----AGCA-GGGCCUGUCUC------------GCg-CCG- -5'
9045 3' -58.9 NC_002512.2 + 33505 0.66 0.8968
Target:  5'- gACCcgcggCGUCCCGaAguGAGCcCGGCc -3'
miRNA:   3'- gUGGaa---GCAGGGCcUguCUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 130452 0.66 0.884035
Target:  5'- uCGCCa-CGUCCCGG-CuGAGCGUccugGGUc -3'
miRNA:   3'- -GUGGaaGCAGGGCCuGuCUCGCG----CCG- -5'
9045 3' -58.9 NC_002512.2 + 115864 0.66 0.88988
Target:  5'- cCACCg-CG-CCCGGugccgcuGCGGGGCcgacgGCGGCg -3'
miRNA:   3'- -GUGGaaGCaGGGCC-------UGUCUCG-----CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 33004 0.66 0.896182
Target:  5'- aCGCCgUCGaugagcaUCCgCGG-CAGAGCGacgGGCa -3'
miRNA:   3'- -GUGGaAGC-------AGG-GCCuGUCUCGCg--CCG- -5'
9045 3' -58.9 NC_002512.2 + 101625 0.66 0.890519
Target:  5'- gCGCCgggacgcgagUCGccgCUCGaGgGGAGCGCGGCg -3'
miRNA:   3'- -GUGGa---------AGCa--GGGCcUgUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 133207 0.66 0.875988
Target:  5'- uUAUCUUCGggacgucguccgCCCagcgaGGACgGGAGgGCGGCg -3'
miRNA:   3'- -GUGGAAGCa-----------GGG-----CCUG-UCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 2199 0.66 0.884035
Target:  5'- cCGCCgucgUCGUCUCGGucgcCGGcGGCGCcGCc -3'
miRNA:   3'- -GUGGa---AGCAGGGCCu---GUC-UCGCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 38438 0.66 0.877349
Target:  5'- cCACCUcaaCGcCCCGGGCGGAGUGa--- -3'
miRNA:   3'- -GUGGAa--GCaGGGCCUGUCUCGCgccg -5'
9045 3' -58.9 NC_002512.2 + 99003 0.66 0.877349
Target:  5'- gGCCUcugCGcggCCCcGAUAGGGCGCgucGGCg -3'
miRNA:   3'- gUGGAa--GCa--GGGcCUGUCUCGCG---CCG- -5'
9045 3' -58.9 NC_002512.2 + 9203 0.66 0.890519
Target:  5'- gACCUcCGUCCCGucgcccaGCAcGA-CGCGGCg -3'
miRNA:   3'- gUGGAaGCAGGGCc------UGU-CUcGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 58183 0.66 0.890519
Target:  5'- cUACCggagUCGagaCgCUGGugAGugGGCGCGGCg -3'
miRNA:   3'- -GUGGa---AGCa--G-GGCCugUC--UCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 81823 0.66 0.869769
Target:  5'- gACCgcggcgCGUCcgaucugCCGGACcgggucggGGAGCGuCGGCg -3'
miRNA:   3'- gUGGaa----GCAG-------GGCCUG--------UCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 117233 0.66 0.890519
Target:  5'- gCACCUUCGUCUCcaAC-GA-CGCGGCc -3'
miRNA:   3'- -GUGGAAGCAGGGccUGuCUcGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 119763 0.66 0.890519
Target:  5'- gAUC-UCGUUCUGGucCGGGGUGUGGUa -3'
miRNA:   3'- gUGGaAGCAGGGCCu-GUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 7229 0.66 0.890519
Target:  5'- gCGCCccUCGgCCCGGcCGGccguCGCGGCg -3'
miRNA:   3'- -GUGGa-AGCaGGGCCuGUCuc--GCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 58051 0.66 0.880047
Target:  5'- gGCCggacCGUCCCgcgguaccggaugccGGGCagcaGGAGCGCGcGCc -3'
miRNA:   3'- gUGGaa--GCAGGG---------------CCUG----UCUCGCGC-CG- -5'
9045 3' -58.9 NC_002512.2 + 100250 0.66 0.869769
Target:  5'- gACCg-CGUCCuCGGAgagcgggaggagaCGGAGCuCGGCg -3'
miRNA:   3'- gUGGaaGCAGG-GCCU-------------GUCUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 128009 0.66 0.8968
Target:  5'- gCGCUUUCG-CCCGcGGCu--GCuGCGGCc -3'
miRNA:   3'- -GUGGAAGCaGGGC-CUGucuCG-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 104688 0.66 0.877349
Target:  5'- -uCCUccgCGUCCUGGACggccaccuggaaGGGGC-CGGCc -3'
miRNA:   3'- guGGAa--GCAGGGCCUG------------UCUCGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.