miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 95014 0.71 0.65265
Target:  5'- uCGCg-UCGUCCgGGGCAGGgGgGCGGUc -3'
miRNA:   3'- -GUGgaAGCAGGgCCUGUCU-CgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 21298 0.72 0.563827
Target:  5'- gACC-UCGUCCCGGACccgcugcgcgucGAGCuCGGCc -3'
miRNA:   3'- gUGGaAGCAGGGCCUGu-----------CUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 121995 0.72 0.565736
Target:  5'- aGCCUuuaUCGgcgCCCGGAggggcCGGAG-GCGGCg -3'
miRNA:   3'- gUGGA---AGCa--GGGCCU-----GUCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 83640 0.72 0.594543
Target:  5'- cCACCag-GUCCCGGucgagGCAGAGCGCGuGg -3'
miRNA:   3'- -GUGGaagCAGGGCC-----UGUCUCGCGC-Cg -5'
9045 3' -58.9 NC_002512.2 + 55533 0.72 0.594543
Target:  5'- gGCCaUCcgcaUCCCggcGGACgAGGGCGCGGCg -3'
miRNA:   3'- gUGGaAGc---AGGG---CCUG-UCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 24246 0.71 0.603235
Target:  5'- cCGCCgacggCGUCCCccgcgggcaggaaGGACGGcGGCGaCGGCa -3'
miRNA:   3'- -GUGGaa---GCAGGG-------------CCUGUC-UCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 101088 0.71 0.623571
Target:  5'- gACCUcUCGcugaagacCCCGGcCAGcGCGCGGCg -3'
miRNA:   3'- gUGGA-AGCa-------GGGCCuGUCuCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 43077 0.71 0.642963
Target:  5'- gCACCg--GUCCCGG----GGCGCGGCg -3'
miRNA:   3'- -GUGGaagCAGGGCCugucUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 82206 0.71 0.65265
Target:  5'- gGCCggCGUCCUcccgGGGCGGgaAGCGgGGCc -3'
miRNA:   3'- gUGGaaGCAGGG----CCUGUC--UCGCgCCG- -5'
9045 3' -58.9 NC_002512.2 + 15440 0.72 0.560014
Target:  5'- gGCC-UCGUCCUcgccgacguagacggGGACGcgguccucGGGCGCGGCg -3'
miRNA:   3'- gUGGaAGCAGGG---------------CCUGU--------CUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 36022 0.73 0.536363
Target:  5'- cCACCgccgCGUCCgauguacUGGGCAGAGCGgGGa -3'
miRNA:   3'- -GUGGaa--GCAGG-------GCCUGUCUCGCgCCg -5'
9045 3' -58.9 NC_002512.2 + 10468 0.74 0.482085
Target:  5'- cCGCCgcCGcCCCGGGCGuGGGCgucGCGGCg -3'
miRNA:   3'- -GUGGaaGCaGGGCCUGU-CUCG---CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 31651 0.78 0.27597
Target:  5'- -----cCGUCCCGGACGGcgcgGGCGCGGCc -3'
miRNA:   3'- guggaaGCAGGGCCUGUC----UCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 123123 0.77 0.33594
Target:  5'- cCGCCgucggcggcCGUCCCgggGGACGGGGCGgCGGCg -3'
miRNA:   3'- -GUGGaa-------GCAGGG---CCUGUCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 25052 0.76 0.350494
Target:  5'- cCGCCgUCGuccUCCCGGACGGAGcCGCcGCg -3'
miRNA:   3'- -GUGGaAGC---AGGGCCUGUCUC-GCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 6383 0.76 0.373154
Target:  5'- cCGCCguggUCGUCgcgaCGGGCAGGGagGCGGCg -3'
miRNA:   3'- -GUGGa---AGCAGg---GCCUGUCUCg-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 15671 0.76 0.380926
Target:  5'- cCGCCUgaCGUCCCgGGGCAGcgGGCGCaGCg -3'
miRNA:   3'- -GUGGAa-GCAGGG-CCUGUC--UCGCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 62272 0.76 0.389598
Target:  5'- gCACCcgaucgaggaagaggUCGUCCCGGgcgucGCAGAG-GCGGCg -3'
miRNA:   3'- -GUGGa--------------AGCAGGGCC-----UGUCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 84208 0.74 0.444252
Target:  5'- aGCCacUCGUCCgCGGACAggcagacgaagagcGAGCGCGGg -3'
miRNA:   3'- gUGGa-AGCAGG-GCCUGU--------------CUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 133634 0.74 0.473144
Target:  5'- uCGCC-UCGUCCCuGGCGGAGUccgggGCGGUc -3'
miRNA:   3'- -GUGGaAGCAGGGcCUGUCUCG-----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.