miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 134161 0.66 0.8968
Target:  5'- gUACCcgUCGaCCCGGACccuG-GCGGCg -3'
miRNA:   3'- -GUGGa-AGCaGGGCCUGucuCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 144505 0.66 0.902874
Target:  5'- aCGCUg-CGcugCCCGGACucgguccgcguGGGCGCGGUc -3'
miRNA:   3'- -GUGGaaGCa--GGGCCUGu----------CUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 122728 0.66 0.902874
Target:  5'- aCGCCc---UCCCGGGCGGAaacGCGCugagggGGCg -3'
miRNA:   3'- -GUGGaagcAGGGCCUGUCU---CGCG------CCG- -5'
9045 3' -58.9 NC_002512.2 + 132152 0.66 0.8968
Target:  5'- cCACC-UCGaggUCGGu--GAGCGCGGCg -3'
miRNA:   3'- -GUGGaAGCag-GGCCuguCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 111238 0.66 0.8968
Target:  5'- gGCCgggCG-CCCGGAgCGucGgGCGGCa -3'
miRNA:   3'- gUGGaa-GCaGGGCCU-GUcuCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 95771 0.66 0.902874
Target:  5'- cCGCCUggacgggggCGUCCgagCGGuaggcgcCGGGGCGCGGa -3'
miRNA:   3'- -GUGGAa--------GCAGG---GCCu------GUCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 128269 0.66 0.902874
Target:  5'- gACUcgCGUCCCGGcGCcGGGCcGaCGGCc -3'
miRNA:   3'- gUGGaaGCAGGGCC-UGuCUCG-C-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 208688 0.66 0.8968
Target:  5'- gGCCgcUGUCCCuGGACGGGuaccCGgGGCu -3'
miRNA:   3'- gUGGaaGCAGGG-CCUGUCUc---GCgCCG- -5'
9045 3' -58.9 NC_002512.2 + 159051 0.66 0.8968
Target:  5'- uCAUC-UCGUCCCGGGgcGAG-GCGGa -3'
miRNA:   3'- -GUGGaAGCAGGGCCUguCUCgCGCCg -5'
9045 3' -58.9 NC_002512.2 + 35486 0.66 0.8968
Target:  5'- gACggUCGUgCCGuGGCGGAGCGUGcCa -3'
miRNA:   3'- gUGgaAGCAgGGC-CUGUCUCGCGCcG- -5'
9045 3' -58.9 NC_002512.2 + 147345 1.1 0.002459
Target:  5'- gCACCUUCGUCCCGGACAGAGCGCGGCc -3'
miRNA:   3'- -GUGGAAGCAGGGCCUGUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 184577 0.66 0.902874
Target:  5'- gACCcgCGggCCGG-CAGGGCgGCGGUc -3'
miRNA:   3'- gUGGaaGCagGGCCuGUCUCG-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 227653 0.66 0.902874
Target:  5'- gCGCC--CGggUCCGGAggaAGAGCGgCGGCg -3'
miRNA:   3'- -GUGGaaGCa-GGGCCUg--UCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 179442 0.66 0.8968
Target:  5'- gGCCggCGUCuuCUGGACAuccGGCGcCGGCc -3'
miRNA:   3'- gUGGaaGCAG--GGCCUGUc--UCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 166782 0.66 0.8968
Target:  5'- -uCCUccCGUCCCGGACgaggacguucuGGAG-GUGGUg -3'
miRNA:   3'- guGGAa-GCAGGGCCUG-----------UCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 148255 0.66 0.902874
Target:  5'- gCGCCga-G-CCUGGACGuGGCGaCGGCc -3'
miRNA:   3'- -GUGGaagCaGGGCCUGUcUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 117058 0.66 0.8968
Target:  5'- uGCCgUUCGUgCCGGAgCAc-GCGCaGGCg -3'
miRNA:   3'- gUGG-AAGCAgGGCCU-GUcuCGCG-CCG- -5'
9045 3' -58.9 NC_002512.2 + 204752 0.66 0.8968
Target:  5'- uGCUcagCGaUCCCGGcCuGGGGCGCGGg -3'
miRNA:   3'- gUGGaa-GC-AGGGCCuG-UCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 120646 0.66 0.902874
Target:  5'- cCACC-UCuUCCCGGGacacCAGAGC-CGGg -3'
miRNA:   3'- -GUGGaAGcAGGGCCU----GUCUCGcGCCg -5'
9045 3' -58.9 NC_002512.2 + 90655 0.66 0.8968
Target:  5'- gGCCgcgGUCUCGGAguCGGcGGcCGCGGCg -3'
miRNA:   3'- gUGGaagCAGGGCCU--GUC-UC-GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.