miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 23314 0.7 0.695005
Target:  5'- gCACCUgcaaguucuggCGcCCCGGGCcgccggcgguguacGAGUGCGGCg -3'
miRNA:   3'- -GUGGAa----------GCaGGGCCUGu-------------CUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 24246 0.71 0.603235
Target:  5'- cCGCCgacggCGUCCCccgcgggcaggaaGGACGGcGGCGaCGGCa -3'
miRNA:   3'- -GUGGaa---GCAGGG-------------CCUGUC-UCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 24671 0.7 0.700724
Target:  5'- gAUCUcCGUCCCGGGCcgcucGGGCGgGGg -3'
miRNA:   3'- gUGGAaGCAGGGCCUGu----CUCGCgCCg -5'
9045 3' -58.9 NC_002512.2 + 25052 0.76 0.350494
Target:  5'- cCGCCgUCGuccUCCCGGACGGAGcCGCcGCg -3'
miRNA:   3'- -GUGGaAGC---AGGGCCUGUCUC-GCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 25190 0.68 0.817217
Target:  5'- uCGCCgacgucgCGUCcgCCGcGACGGAGCGgGaGCg -3'
miRNA:   3'- -GUGGaa-----GCAG--GGC-CUGUCUCGCgC-CG- -5'
9045 3' -58.9 NC_002512.2 + 29897 0.68 0.808954
Target:  5'- gGCCgcUCGUCCCcgccGGGCGcgcGGaCGCGGCg -3'
miRNA:   3'- gUGGa-AGCAGGG----CCUGUc--UC-GCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 30391 0.66 0.902874
Target:  5'- gACCUgauccUCGcggCCCugacGGACGGGGaCGCGGg -3'
miRNA:   3'- gUGGA-----AGCa--GGG----CCUGUCUC-GCGCCg -5'
9045 3' -58.9 NC_002512.2 + 31651 0.78 0.27597
Target:  5'- -----cCGUCCCGGACGGcgcgGGCGCGGCc -3'
miRNA:   3'- guggaaGCAGGGCCUGUC----UCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 33004 0.66 0.896182
Target:  5'- aCGCCgUCGaugagcaUCCgCGG-CAGAGCGacgGGCa -3'
miRNA:   3'- -GUGGaAGC-------AGG-GCCuGUCUCGCg--CCG- -5'
9045 3' -58.9 NC_002512.2 + 33505 0.66 0.8968
Target:  5'- gACCcgcggCGUCCCGaAguGAGCcCGGCc -3'
miRNA:   3'- gUGGaa---GCAGGGCcUguCUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 35486 0.66 0.8968
Target:  5'- gACggUCGUgCCGuGGCGGAGCGUGcCa -3'
miRNA:   3'- gUGgaAGCAgGGC-CUGUCUCGCGCcG- -5'
9045 3' -58.9 NC_002512.2 + 36022 0.73 0.536363
Target:  5'- cCACCgccgCGUCCgauguacUGGGCAGAGCGgGGa -3'
miRNA:   3'- -GUGGaa--GCAGG-------GCCUGUCUCGCgCCg -5'
9045 3' -58.9 NC_002512.2 + 36423 0.7 0.695005
Target:  5'- gGCC-UCGUCCCGGA--GGGCccgcucccgccaccgGCGGCc -3'
miRNA:   3'- gUGGaAGCAGGGCCUguCUCG---------------CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 38438 0.66 0.877349
Target:  5'- cCACCUcaaCGcCCCGGGCGGAGUGa--- -3'
miRNA:   3'- -GUGGAa--GCaGGGCCUGUCUCGCgccg -5'
9045 3' -58.9 NC_002512.2 + 40075 0.66 0.902874
Target:  5'- cCACCgucUCGUgucCCCGGAucggagagaCAGAGCcucguaCGGCg -3'
miRNA:   3'- -GUGGa--AGCA---GGGCCU---------GUCUCGc-----GCCG- -5'
9045 3' -58.9 NC_002512.2 + 40362 0.68 0.800548
Target:  5'- aCGCCgaccgCGgcgagCCCGGGCccGGAGCGUcuccaccuGGCg -3'
miRNA:   3'- -GUGGaa---GCa----GGGCCUG--UCUCGCG--------CCG- -5'
9045 3' -58.9 NC_002512.2 + 43077 0.71 0.642963
Target:  5'- gCACCg--GUCCCGG----GGCGCGGCg -3'
miRNA:   3'- -GUGGaagCAGGGCCugucUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 45512 0.68 0.783332
Target:  5'- aCGCCgaaagCG-CCCGcGGCGG-GCGgCGGCg -3'
miRNA:   3'- -GUGGaa---GCaGGGC-CUGUCuCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 48203 0.68 0.817217
Target:  5'- gACCcgCGggaUCCCGGccGCGGGGCGCGa- -3'
miRNA:   3'- gUGGaaGC---AGGGCC--UGUCUCGCGCcg -5'
9045 3' -58.9 NC_002512.2 + 54241 0.67 0.833282
Target:  5'- gCACUcgcaCGUCCgcaGcGGCAGGGCGgCGGCg -3'
miRNA:   3'- -GUGGaa--GCAGGg--C-CUGUCUCGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.