miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 182429 0.66 0.979284
Target:  5'- cUugCGGAAcucggccucgGCCucCGCCGUGCGGGcguGGu -3'
miRNA:   3'- uAugGCCUU----------UGGu-GCGGUACGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 114051 0.66 0.979284
Target:  5'- -gGCaGGGGcCCGCGUCGUGCAGcaccGGGu -3'
miRNA:   3'- uaUGgCCUUuGGUGCGGUACGUC----UCC- -5'
9045 5' -53.6 NC_002512.2 + 130503 0.66 0.979284
Target:  5'- -aGCCGGGcuGCgAgGCCGUGCGGuucGGc -3'
miRNA:   3'- uaUGGCCUu-UGgUgCGGUACGUCu--CC- -5'
9045 5' -53.6 NC_002512.2 + 164223 0.66 0.979061
Target:  5'- -cGCCGGGAagggcAUCggcaugguguucgGCGCCGUGgCGGGGGc -3'
miRNA:   3'- uaUGGCCUU-----UGG-------------UGCGGUAC-GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 43582 0.66 0.979061
Target:  5'- uUGCCGauGACCACGgCGUcgcggacgaggacGCGGAGGc -3'
miRNA:   3'- uAUGGCcuUUGGUGCgGUA-------------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 166448 0.67 0.976974
Target:  5'- --uCCGGGggcGACgGCGCCggGCucGAGGg -3'
miRNA:   3'- uauGGCCU---UUGgUGCGGuaCGu-CUCC- -5'
9045 5' -53.6 NC_002512.2 + 136533 0.67 0.976974
Target:  5'- --cCCGGGAcugcACgCugGCCAUGCuGcAGGa -3'
miRNA:   3'- uauGGCCUU----UG-GugCGGUACGuC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 109955 0.67 0.976973
Target:  5'- cGUGCgGGGGcgacGCCGCGCUcgagaucuugGUGCAGAacaGGa -3'
miRNA:   3'- -UAUGgCCUU----UGGUGCGG----------UACGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 75564 0.67 0.976973
Target:  5'- -cGCCGGGgcggGGCCGcCGCCGUcGCGGucGa -3'
miRNA:   3'- uaUGGCCU----UUGGU-GCGGUA-CGUCucC- -5'
9045 5' -53.6 NC_002512.2 + 56259 0.67 0.976973
Target:  5'- --cCCGGGGuUCGcCGCCGcgGCGGAGGc -3'
miRNA:   3'- uauGGCCUUuGGU-GCGGUa-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 46362 0.67 0.976973
Target:  5'- -cGCCGGu--CCGCaGCCAgGC-GAGGa -3'
miRNA:   3'- uaUGGCCuuuGGUG-CGGUaCGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 4429 0.67 0.976973
Target:  5'- cUGCUGGuAGACCGgcggggUGCCGggcGCGGGGGu -3'
miRNA:   3'- uAUGGCC-UUUGGU------GCGGUa--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 124941 0.67 0.976732
Target:  5'- -gGCCGGc-GCCGCGCCGacGCcggacgaGGAGGc -3'
miRNA:   3'- uaUGGCCuuUGGUGCGGUa-CG-------UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 220591 0.67 0.974479
Target:  5'- aGUGCCGGGAuCCG-GUCGUGCGcGAGc -3'
miRNA:   3'- -UAUGGCCUUuGGUgCGGUACGU-CUCc -5'
9045 5' -53.6 NC_002512.2 + 67554 0.67 0.971793
Target:  5'- --gUCGGuGGACaGCGCCAUGCAGAu- -3'
miRNA:   3'- uauGGCC-UUUGgUGCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 206562 0.67 0.971793
Target:  5'- -cGCCGGcgGCCcgggGCGCCAgaacUGCAGGu- -3'
miRNA:   3'- uaUGGCCuuUGG----UGCGGU----ACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 222425 0.67 0.971793
Target:  5'- -gGCCGGcAGCCGCGCCGcgGCuucccccGGGc -3'
miRNA:   3'- uaUGGCCuUUGGUGCGGUa-CGuc-----UCC- -5'
9045 5' -53.6 NC_002512.2 + 113163 0.67 0.968909
Target:  5'- -aGCCGG--GCCACGUCggacGUGCcGGGGc -3'
miRNA:   3'- uaUGGCCuuUGGUGCGG----UACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 107927 0.67 0.968909
Target:  5'- -gGCgGGGAcCCGgGUCAgcUGCAGGGGc -3'
miRNA:   3'- uaUGgCCUUuGGUgCGGU--ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 136211 0.67 0.968909
Target:  5'- -cGCCGGcgGCCugGUgc-GCGGGGGu -3'
miRNA:   3'- uaUGGCCuuUGGugCGguaCGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.