miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 122077 0.66 0.985187
Target:  5'- -cAgCGGggGCUGCGaCAUGCGGAa- -3'
miRNA:   3'- uaUgGCCuuUGGUGCgGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 57035 0.66 0.985187
Target:  5'- -gAgCGGAGGCCGCGuCCGacgacCGGGGGg -3'
miRNA:   3'- uaUgGCCUUUGGUGC-GGUac---GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 157797 0.66 0.985187
Target:  5'- -aACCGGGcgguGugCAgGUCGcUGCGGGGGc -3'
miRNA:   3'- uaUGGCCU----UugGUgCGGU-ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 67161 0.66 0.985187
Target:  5'- -gACCGGAuagGACCGCaGCCAUGUc---- -3'
miRNA:   3'- uaUGGCCU---UUGGUG-CGGUACGucucc -5'
9045 5' -53.6 NC_002512.2 + 222668 0.66 0.984663
Target:  5'- -gGCCGaGGggcgccucgaguucGACUGCGCCcgGCAcGGGGa -3'
miRNA:   3'- uaUGGC-CU--------------UUGGUGCGGuaCGU-CUCC- -5'
9045 5' -53.6 NC_002512.2 + 209875 0.66 0.983383
Target:  5'- -cGCCGGcuACUACGUgGUcggucgcggggaGCAGGGGc -3'
miRNA:   3'- uaUGGCCuuUGGUGCGgUA------------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 62467 0.66 0.983383
Target:  5'- cGUGCCGccgcacGAGAUCgACGCCcuucAUGCAGAGc -3'
miRNA:   3'- -UAUGGC------CUUUGG-UGCGG----UACGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 97941 0.66 0.983383
Target:  5'- -cGCCGGGcaugagguuCUACGCUcccGUGCAGcAGGg -3'
miRNA:   3'- uaUGGCCUuu-------GGUGCGG---UACGUC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 159011 0.66 0.983383
Target:  5'- --cCCGGcguCCGCGCCggGCGGAc- -3'
miRNA:   3'- uauGGCCuuuGGUGCGGuaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 49783 0.66 0.982025
Target:  5'- -gACaCGGggGCCgagguggACGCCAucgcggacgagaaacUGCGGAGa -3'
miRNA:   3'- uaUG-GCCuuUGG-------UGCGGU---------------ACGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 212443 0.66 0.981418
Target:  5'- -gGCCGGccGGCCGCGaCCGccGCgaGGAGGg -3'
miRNA:   3'- uaUGGCCu-UUGGUGC-GGUa-CG--UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 123137 0.66 0.981418
Target:  5'- -aGCCGGAcGCggaGCGCCGccgggGCcGAGGa -3'
miRNA:   3'- uaUGGCCUuUGg--UGCGGUa----CGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 57324 0.66 0.981418
Target:  5'- -gGCgCGGAGGa-ACGUCAcGCAGGGGg -3'
miRNA:   3'- uaUG-GCCUUUggUGCGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 101226 0.66 0.981418
Target:  5'- -cGCCGGGuuCCgGCGCCGgcaguucgagaUGCAGAa- -3'
miRNA:   3'- uaUGGCCUuuGG-UGCGGU-----------ACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 119562 0.66 0.981418
Target:  5'- -gACCGGGcgGACCGCgggaGCCcgGCGGGu- -3'
miRNA:   3'- uaUGGCCU--UUGGUG----CGGuaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 47493 0.66 0.981418
Target:  5'- -gGCCGGGgaGACgCugGCCAggacGCAGAc- -3'
miRNA:   3'- uaUGGCCU--UUG-GugCGGUa---CGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 74614 0.66 0.980796
Target:  5'- -gACCGGAGcggagcgcgagaccGCCGCGCgAcgGCccGGGGGa -3'
miRNA:   3'- uaUGGCCUU--------------UGGUGCGgUa-CG--UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 182429 0.66 0.979284
Target:  5'- cUugCGGAAcucggccucgGCCucCGCCGUGCGGGcguGGu -3'
miRNA:   3'- uAugGCCUU----------UGGu-GCGGUACGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 130503 0.66 0.979284
Target:  5'- -aGCCGGGcuGCgAgGCCGUGCGGuucGGc -3'
miRNA:   3'- uaUGGCCUu-UGgUgCGGUACGUCu--CC- -5'
9045 5' -53.6 NC_002512.2 + 114051 0.66 0.979284
Target:  5'- -gGCaGGGGcCCGCGUCGUGCAGcaccGGGu -3'
miRNA:   3'- uaUGgCCUUuGGUGCGGUACGUC----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.