Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9045 | 5' | -53.6 | NC_002512.2 | + | 114051 | 0.66 | 0.979284 |
Target: 5'- -gGCaGGGGcCCGCGUCGUGCAGcaccGGGu -3' miRNA: 3'- uaUGgCCUUuGGUGCGGUACGUC----UCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 43582 | 0.66 | 0.979061 |
Target: 5'- uUGCCGauGACCACGgCGUcgcggacgaggacGCGGAGGc -3' miRNA: 3'- uAUGGCcuUUGGUGCgGUA-------------CGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 174334 | 0.66 | 0.986679 |
Target: 5'- -gGCgGGGGuccGCCGCGCCcucguccgccgggAUGCGGAuGGc -3' miRNA: 3'- uaUGgCCUU---UGGUGCGG-------------UACGUCU-CC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 113134 | 0.66 | 0.988343 |
Target: 5'- --cUCGGAGACCGCGC---GCGGGGc -3' miRNA: 3'- uauGGCCUUUGGUGCGguaCGUCUCc -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 159011 | 0.66 | 0.983383 |
Target: 5'- --cCCGGcguCCGCGCCggGCGGAc- -3' miRNA: 3'- uauGGCCuuuGGUGCGGuaCGUCUcc -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 204646 | 0.66 | 0.986838 |
Target: 5'- -gACCGGGAcgGCgACGC---GCGGGGGa -3' miRNA: 3'- uaUGGCCUU--UGgUGCGguaCGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 56053 | 0.66 | 0.988343 |
Target: 5'- ---aCGGAGGaccuCCugGCCAUGgAGAGc -3' miRNA: 3'- uaugGCCUUU----GGugCGGUACgUCUCc -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 217581 | 0.66 | 0.988343 |
Target: 5'- -aGCCGGuccGGCgGCGCCGccuCGGGGGu -3' miRNA: 3'- uaUGGCCu--UUGgUGCGGUac-GUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 149415 | 0.66 | 0.988343 |
Target: 5'- -gGCCgcgaGGGGACCGCGgCGggggcgggcGCGGGGGg -3' miRNA: 3'- uaUGG----CCUUUGGUGCgGUa--------CGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 93710 | 0.66 | 0.986838 |
Target: 5'- --cCCGGcGACCcCGCCGcGCGGcGGa -3' miRNA: 3'- uauGGCCuUUGGuGCGGUaCGUCuCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 157797 | 0.66 | 0.985187 |
Target: 5'- -aACCGGGcgguGugCAgGUCGcUGCGGGGGc -3' miRNA: 3'- uaUGGCCU----UugGUgCGGU-ACGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 123137 | 0.66 | 0.981418 |
Target: 5'- -aGCCGGAcGCggaGCGCCGccgggGCcGAGGa -3' miRNA: 3'- uaUGGCCUuUGg--UGCGGUa----CGuCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 101226 | 0.66 | 0.981418 |
Target: 5'- -cGCCGGGuuCCgGCGCCGgcaguucgagaUGCAGAa- -3' miRNA: 3'- uaUGGCCUuuGG-UGCGGU-----------ACGUCUcc -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 209875 | 0.66 | 0.983383 |
Target: 5'- -cGCCGGcuACUACGUgGUcggucgcggggaGCAGGGGc -3' miRNA: 3'- uaUGGCCuuUGGUGCGgUA------------CGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 110412 | 0.66 | 0.985865 |
Target: 5'- -cGCCGGA--CCGCGCCuuccacuuccgcccgAUcuagagGCGGAGGa -3' miRNA: 3'- uaUGGCCUuuGGUGCGG---------------UA------CGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 67161 | 0.66 | 0.985187 |
Target: 5'- -gACCGGAuagGACCGCaGCCAUGUc---- -3' miRNA: 3'- uaUGGCCU---UUGGUG-CGGUACGucucc -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 222668 | 0.66 | 0.984663 |
Target: 5'- -gGCCGaGGggcgccucgaguucGACUGCGCCcgGCAcGGGGa -3' miRNA: 3'- uaUGGC-CU--------------UUGGUGCGGuaCGU-CUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 212443 | 0.66 | 0.981418 |
Target: 5'- -gGCCGGccGGCCGCGaCCGccGCgaGGAGGg -3' miRNA: 3'- uaUGGCCu-UUGGUGC-GGUa-CG--UCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 119562 | 0.66 | 0.981418 |
Target: 5'- -gACCGGGcgGACCGCgggaGCCcgGCGGGu- -3' miRNA: 3'- uaUGGCCU--UUGGUG----CGGuaCGUCUcc -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 140038 | 0.66 | 0.988343 |
Target: 5'- -cACCGcacgcaGAACCGgGCCGUGCAGcgcGGu -3' miRNA: 3'- uaUGGCc-----UUUGGUgCGGUACGUCu--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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