miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 114051 0.66 0.979284
Target:  5'- -gGCaGGGGcCCGCGUCGUGCAGcaccGGGu -3'
miRNA:   3'- uaUGgCCUUuGGUGCGGUACGUC----UCC- -5'
9045 5' -53.6 NC_002512.2 + 43582 0.66 0.979061
Target:  5'- uUGCCGauGACCACGgCGUcgcggacgaggacGCGGAGGc -3'
miRNA:   3'- uAUGGCcuUUGGUGCgGUA-------------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 174334 0.66 0.986679
Target:  5'- -gGCgGGGGuccGCCGCGCCcucguccgccgggAUGCGGAuGGc -3'
miRNA:   3'- uaUGgCCUU---UGGUGCGG-------------UACGUCU-CC- -5'
9045 5' -53.6 NC_002512.2 + 113134 0.66 0.988343
Target:  5'- --cUCGGAGACCGCGC---GCGGGGc -3'
miRNA:   3'- uauGGCCUUUGGUGCGguaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 159011 0.66 0.983383
Target:  5'- --cCCGGcguCCGCGCCggGCGGAc- -3'
miRNA:   3'- uauGGCCuuuGGUGCGGuaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 204646 0.66 0.986838
Target:  5'- -gACCGGGAcgGCgACGC---GCGGGGGa -3'
miRNA:   3'- uaUGGCCUU--UGgUGCGguaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 56053 0.66 0.988343
Target:  5'- ---aCGGAGGaccuCCugGCCAUGgAGAGc -3'
miRNA:   3'- uaugGCCUUU----GGugCGGUACgUCUCc -5'
9045 5' -53.6 NC_002512.2 + 217581 0.66 0.988343
Target:  5'- -aGCCGGuccGGCgGCGCCGccuCGGGGGu -3'
miRNA:   3'- uaUGGCCu--UUGgUGCGGUac-GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 149415 0.66 0.988343
Target:  5'- -gGCCgcgaGGGGACCGCGgCGggggcgggcGCGGGGGg -3'
miRNA:   3'- uaUGG----CCUUUGGUGCgGUa--------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 93710 0.66 0.986838
Target:  5'- --cCCGGcGACCcCGCCGcGCGGcGGa -3'
miRNA:   3'- uauGGCCuUUGGuGCGGUaCGUCuCC- -5'
9045 5' -53.6 NC_002512.2 + 157797 0.66 0.985187
Target:  5'- -aACCGGGcgguGugCAgGUCGcUGCGGGGGc -3'
miRNA:   3'- uaUGGCCU----UugGUgCGGU-ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 123137 0.66 0.981418
Target:  5'- -aGCCGGAcGCggaGCGCCGccgggGCcGAGGa -3'
miRNA:   3'- uaUGGCCUuUGg--UGCGGUa----CGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 101226 0.66 0.981418
Target:  5'- -cGCCGGGuuCCgGCGCCGgcaguucgagaUGCAGAa- -3'
miRNA:   3'- uaUGGCCUuuGG-UGCGGU-----------ACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 209875 0.66 0.983383
Target:  5'- -cGCCGGcuACUACGUgGUcggucgcggggaGCAGGGGc -3'
miRNA:   3'- uaUGGCCuuUGGUGCGgUA------------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 110412 0.66 0.985865
Target:  5'- -cGCCGGA--CCGCGCCuuccacuuccgcccgAUcuagagGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuuGGUGCGG---------------UA------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 67161 0.66 0.985187
Target:  5'- -gACCGGAuagGACCGCaGCCAUGUc---- -3'
miRNA:   3'- uaUGGCCU---UUGGUG-CGGUACGucucc -5'
9045 5' -53.6 NC_002512.2 + 222668 0.66 0.984663
Target:  5'- -gGCCGaGGggcgccucgaguucGACUGCGCCcgGCAcGGGGa -3'
miRNA:   3'- uaUGGC-CU--------------UUGGUGCGGuaCGU-CUCC- -5'
9045 5' -53.6 NC_002512.2 + 212443 0.66 0.981418
Target:  5'- -gGCCGGccGGCCGCGaCCGccGCgaGGAGGg -3'
miRNA:   3'- uaUGGCCu-UUGGUGC-GGUa-CG--UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 119562 0.66 0.981418
Target:  5'- -gACCGGGcgGACCGCgggaGCCcgGCGGGu- -3'
miRNA:   3'- uaUGGCCU--UUGGUG----CGGuaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 140038 0.66 0.988343
Target:  5'- -cACCGcacgcaGAACCGgGCCGUGCAGcgcGGu -3'
miRNA:   3'- uaUGGCc-----UUUGGUgCGGUACGUCu--CC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.