miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 5022 0.72 0.832562
Target:  5'- -gGCgGGAAACCAgGCCGUggccauggccGUGGAGGu -3'
miRNA:   3'- uaUGgCCUUUGGUgCGGUA----------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 164439 0.72 0.832562
Target:  5'- -cGCCgGGAAGCCgcucgGCGCCcucgGCGGGGGc -3'
miRNA:   3'- uaUGG-CCUUUGG-----UGCGGua--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 8333 0.72 0.840747
Target:  5'- -aGCCGGAGACCGCGgguCCGgcguaGCGGuAGGc -3'
miRNA:   3'- uaUGGCCUUUGGUGC---GGUa----CGUC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 121053 0.72 0.840747
Target:  5'- -gGCCGGguACC-CGCCGcccgaggcGCGGAGGa -3'
miRNA:   3'- uaUGGCCuuUGGuGCGGUa-------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 96744 0.71 0.848744
Target:  5'- -aACCGGAcgagcgagcggGGCCccguccgagcgGCGCCAUGCAGAu- -3'
miRNA:   3'- uaUGGCCU-----------UUGG-----------UGCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 192091 0.71 0.86415
Target:  5'- -cACaCGGAAcCCugGCCAauccuuucccgGCAGAGGa -3'
miRNA:   3'- uaUG-GCCUUuGGugCGGUa----------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 67078 0.71 0.871546
Target:  5'- -gGCCGGuugGACCGCGCCuUGguGAc- -3'
miRNA:   3'- uaUGGCCu--UUGGUGCGGuACguCUcc -5'
9045 5' -53.6 NC_002512.2 + 137364 0.71 0.87873
Target:  5'- -gGCCGGGuagauCCGCGCgGUcucccggaaGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuu---GGUGCGgUA---------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 220318 0.71 0.87873
Target:  5'- -gGCCGGggGCCGgGCUc--CGGGGGg -3'
miRNA:   3'- uaUGGCCuuUGGUgCGGuacGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 196632 0.71 0.87873
Target:  5'- --cCCGGGuGGCCgACGCCGUGUgucuGGGGGg -3'
miRNA:   3'- uauGGCCU-UUGG-UGCGGUACG----UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 141749 0.71 0.879436
Target:  5'- -gGgCGGAucguccccuacauccGCCGCGCCGUGCAGgacAGGa -3'
miRNA:   3'- uaUgGCCUu--------------UGGUGCGGUACGUC---UCC- -5'
9045 5' -53.6 NC_002512.2 + 222548 0.7 0.88501
Target:  5'- -gGCCGGGcuacggcgacccGACCGucccgccgcggccCGCCGUcGCGGAGGa -3'
miRNA:   3'- uaUGGCCU------------UUGGU-------------GCGGUA-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 154538 0.7 0.88501
Target:  5'- cUACCGGuccGCCGCcuccgccucggucGCCAUGgGGGGGc -3'
miRNA:   3'- uAUGGCCuu-UGGUG-------------CGGUACgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 2074 0.7 0.885697
Target:  5'- -aGCgCGGAGuCCACGCCggGCGGGagcGGg -3'
miRNA:   3'- uaUG-GCCUUuGGUGCGGuaCGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 214161 0.7 0.885697
Target:  5'- cUACCGGGAccccuacgucgaGCC-CGUCAUcgucGCGGAGGa -3'
miRNA:   3'- uAUGGCCUU------------UGGuGCGGUA----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 81900 0.7 0.885697
Target:  5'- uGUACucgCGGAggUCguGCGCCGUGgAGGGGg -3'
miRNA:   3'- -UAUG---GCCUuuGG--UGCGGUACgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 129734 0.7 0.890442
Target:  5'- cUGCuCGGAAuguCCGCGCCAcgUGCcuccugguccgccuAGAGGa -3'
miRNA:   3'- uAUG-GCCUUu--GGUGCGGU--ACG--------------UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 207431 0.7 0.892442
Target:  5'- cUGCaCGGAGAUCugGCCGUaguagcccaGCGGAuGGg -3'
miRNA:   3'- uAUG-GCCUUUGGugCGGUA---------CGUCU-CC- -5'
9045 5' -53.6 NC_002512.2 + 142280 0.7 0.892442
Target:  5'- -gGCCGGGGACgGCGUCGa-CGGGGGa -3'
miRNA:   3'- uaUGGCCUUUGgUGCGGUacGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 101088 0.7 0.898961
Target:  5'- --cCCGcGGACCACGCCGgagaccCAGAGGg -3'
miRNA:   3'- uauGGCcUUUGGUGCGGUac----GUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.