miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 147380 1.09 0.006861
Target:  5'- aAUACCGGAAACCACGCCAUGCAGAGGa -3'
miRNA:   3'- -UAUGGCCUUUGGUGCGGUACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 51516 0.83 0.281593
Target:  5'- -gGCUGGAGAUCACGCCGU-CGGAGGa -3'
miRNA:   3'- uaUGGCCUUUGGUGCGGUAcGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 20312 0.8 0.43196
Target:  5'- cGUGCCGGAcgaggagcucgucgaGACCGCGCUccgagacgAUGUAGAGGa -3'
miRNA:   3'- -UAUGGCCU---------------UUGGUGCGG--------UACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 121396 0.79 0.446311
Target:  5'- -gGCCGGAcggAGCCGCGCCuggcGUGGAGGg -3'
miRNA:   3'- uaUGGCCU---UUGGUGCGGua--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 51646 0.78 0.521716
Target:  5'- --cCCGGAGACCGCGCCGUcccCGGAGa -3'
miRNA:   3'- uauGGCCUUUGGUGCGGUAc--GUCUCc -5'
9045 5' -53.6 NC_002512.2 + 68051 0.77 0.531507
Target:  5'- cGUGuCCGGAAGCCuCGUCGgaGCAGAGGg -3'
miRNA:   3'- -UAU-GGCCUUUGGuGCGGUa-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 70688 0.76 0.621878
Target:  5'- --cCCGGGGACCG-GCCggGCGGGGGa -3'
miRNA:   3'- uauGGCCUUUGGUgCGGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 139 0.75 0.671653
Target:  5'- -cGCCgGGGAGCCgggcgggGCGCCG-GCGGAGGa -3'
miRNA:   3'- uaUGG-CCUUUGG-------UGCGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 229542 0.75 0.671653
Target:  5'- -cGCCgGGGAGCCgggcgggGCGCCG-GCGGAGGa -3'
miRNA:   3'- uaUGG-CCUUUGG-------UGCGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 139958 0.74 0.712753
Target:  5'- uGUACCGGAGucgcGCCAUGCCcUGCAucgucugcguGGGGu -3'
miRNA:   3'- -UAUGGCCUU----UGGUGCGGuACGU----------CUCC- -5'
9045 5' -53.6 NC_002512.2 + 60332 0.74 0.712753
Target:  5'- -cGCCGGcgaAGGCCACGCCGccggGCAGccGGGa -3'
miRNA:   3'- uaUGGCC---UUUGGUGCGGUa---CGUC--UCC- -5'
9045 5' -53.6 NC_002512.2 + 47371 0.74 0.722628
Target:  5'- -cACCGGAcGCUGCGgCGcGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuUGGUGCgGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 53843 0.74 0.732425
Target:  5'- --cCCGGggGCgGCGCCGggaGgAGAGGg -3'
miRNA:   3'- uauGGCCuuUGgUGCGGUa--CgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 96516 0.74 0.742137
Target:  5'- -cGCCGGAgggAGCCGCGCCG-GCGGugugagccGGGg -3'
miRNA:   3'- uaUGGCCU---UUGGUGCGGUaCGUC--------UCC- -5'
9045 5' -53.6 NC_002512.2 + 130581 0.74 0.742137
Target:  5'- cGUGaaGGAGGCCGCgGCCucggagGCGGAGGa -3'
miRNA:   3'- -UAUggCCUUUGGUG-CGGua----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 222321 0.73 0.770667
Target:  5'- gGUACCGGAGGCUgcggcgGCGCCuccaGGAGGa -3'
miRNA:   3'- -UAUGGCCUUUGG------UGCGGuacgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 21470 0.73 0.779944
Target:  5'- -cGCCGGGAGCgGCGCCc-GUAGAGc -3'
miRNA:   3'- uaUGGCCUUUGgUGCGGuaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 117744 0.73 0.779944
Target:  5'- -cGCCGucGACCgccucgucuucGCGCCAUGCgGGAGGg -3'
miRNA:   3'- uaUGGCcuUUGG-----------UGCGGUACG-UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 135799 0.73 0.779944
Target:  5'- --gUCGGAccGGCCGcCGCCGUcGCGGGGGg -3'
miRNA:   3'- uauGGCCU--UUGGU-GCGGUA-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 39680 0.72 0.798098
Target:  5'- --cCCGGAcGACCGCGCCGccgaccuucUGCAGccGGGg -3'
miRNA:   3'- uauGGCCU-UUGGUGCGGU---------ACGUC--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.