miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 2074 0.7 0.885697
Target:  5'- -aGCgCGGAGuCCACGCCggGCGGGagcGGg -3'
miRNA:   3'- uaUG-GCCUUuGGUGCGGuaCGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 39680 0.72 0.798098
Target:  5'- --cCCGGAcGACCGCGCCGccgaccuucUGCAGccGGGg -3'
miRNA:   3'- uauGGCCU-UUGGUGCGGU---------ACGUC--UCC- -5'
9045 5' -53.6 NC_002512.2 + 5022 0.72 0.832562
Target:  5'- -gGCgGGAAACCAgGCCGUggccauggccGUGGAGGu -3'
miRNA:   3'- uaUGgCCUUUGGUgCGGUA----------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 8333 0.72 0.840747
Target:  5'- -aGCCGGAGACCGCGgguCCGgcguaGCGGuAGGc -3'
miRNA:   3'- uaUGGCCUUUGGUGC---GGUa----CGUC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 192091 0.71 0.86415
Target:  5'- -cACaCGGAAcCCugGCCAauccuuucccgGCAGAGGa -3'
miRNA:   3'- uaUG-GCCUUuGGugCGGUa----------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 67078 0.71 0.871546
Target:  5'- -gGCCGGuugGACCGCGCCuUGguGAc- -3'
miRNA:   3'- uaUGGCCu--UUGGUGCGGuACguCUcc -5'
9045 5' -53.6 NC_002512.2 + 137364 0.71 0.87873
Target:  5'- -gGCCGGGuagauCCGCGCgGUcucccggaaGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuu---GGUGCGgUA---------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 141749 0.71 0.879436
Target:  5'- -gGgCGGAucguccccuacauccGCCGCGCCGUGCAGgacAGGa -3'
miRNA:   3'- uaUgGCCUu--------------UGGUGCGGUACGUC---UCC- -5'
9045 5' -53.6 NC_002512.2 + 154538 0.7 0.88501
Target:  5'- cUACCGGuccGCCGCcuccgccucggucGCCAUGgGGGGGc -3'
miRNA:   3'- uAUGGCCuu-UGGUG-------------CGGUACgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 135799 0.73 0.779944
Target:  5'- --gUCGGAccGGCCGcCGCCGUcGCGGGGGg -3'
miRNA:   3'- uauGGCCU--UUGGU-GCGGUA-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 117744 0.73 0.779944
Target:  5'- -cGCCGucGACCgccucgucuucGCGCCAUGCgGGAGGg -3'
miRNA:   3'- uaUGGCcuUUGG-----------UGCGGUACG-UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 21470 0.73 0.779944
Target:  5'- -cGCCGGGAGCgGCGCCc-GUAGAGc -3'
miRNA:   3'- uaUGGCCUUUGgUGCGGuaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 20312 0.8 0.43196
Target:  5'- cGUGCCGGAcgaggagcucgucgaGACCGCGCUccgagacgAUGUAGAGGa -3'
miRNA:   3'- -UAUGGCCU---------------UUGGUGCGG--------UACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 51646 0.78 0.521716
Target:  5'- --cCCGGAGACCGCGCCGUcccCGGAGa -3'
miRNA:   3'- uauGGCCUUUGGUGCGGUAc--GUCUCc -5'
9045 5' -53.6 NC_002512.2 + 68051 0.77 0.531507
Target:  5'- cGUGuCCGGAAGCCuCGUCGgaGCAGAGGg -3'
miRNA:   3'- -UAU-GGCCUUUGGuGCGGUa-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 70688 0.76 0.621878
Target:  5'- --cCCGGGGACCG-GCCggGCGGGGGa -3'
miRNA:   3'- uauGGCCUUUGGUgCGGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 60332 0.74 0.712753
Target:  5'- -cGCCGGcgaAGGCCACGCCGccggGCAGccGGGa -3'
miRNA:   3'- uaUGGCC---UUUGGUGCGGUa---CGUC--UCC- -5'
9045 5' -53.6 NC_002512.2 + 139958 0.74 0.712753
Target:  5'- uGUACCGGAGucgcGCCAUGCCcUGCAucgucugcguGGGGu -3'
miRNA:   3'- -UAUGGCCUU----UGGUGCGGuACGU----------CUCC- -5'
9045 5' -53.6 NC_002512.2 + 47371 0.74 0.722628
Target:  5'- -cACCGGAcGCUGCGgCGcGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuUGGUGCgGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 53843 0.74 0.732425
Target:  5'- --cCCGGggGCgGCGCCGggaGgAGAGGg -3'
miRNA:   3'- uauGGCCuuUGgUGCGGUa--CgUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.