miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 139 0.75 0.671653
Target:  5'- -cGCCgGGGAGCCgggcgggGCGCCG-GCGGAGGa -3'
miRNA:   3'- uaUGG-CCUUUGG-------UGCGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 2074 0.7 0.885697
Target:  5'- -aGCgCGGAGuCCACGCCggGCGGGagcGGg -3'
miRNA:   3'- uaUG-GCCUUuGGUGCGGuaCGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 4429 0.67 0.976973
Target:  5'- cUGCUGGuAGACCGgcggggUGCCGggcGCGGGGGu -3'
miRNA:   3'- uAUGGCC-UUUGGU------GCGGUa--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 5022 0.72 0.832562
Target:  5'- -gGCgGGAAACCAgGCCGUggccauggccGUGGAGGu -3'
miRNA:   3'- uaUGgCCUUUGGUgCGGUA----------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 8333 0.72 0.840747
Target:  5'- -aGCCGGAGACCGCGgguCCGgcguaGCGGuAGGc -3'
miRNA:   3'- uaUGGCCUUUGGUGC---GGUa----CGUC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 8854 0.66 0.987457
Target:  5'- cUGCCGGGcggcaccccguugguGGCCGCGUgGUGaCAGAa- -3'
miRNA:   3'- uAUGGCCU---------------UUGGUGCGgUAC-GUCUcc -5'
9045 5' -53.6 NC_002512.2 + 14622 0.68 0.947141
Target:  5'- aGUGgCGGAGGCCGCGCUu----GAGGa -3'
miRNA:   3'- -UAUgGCCUUUGGUGCGGuacguCUCC- -5'
9045 5' -53.6 NC_002512.2 + 15127 0.67 0.965822
Target:  5'- -cGCCGGAcugcGACggCACGCUGUuccgcGCAGGGGu -3'
miRNA:   3'- uaUGGCCU----UUG--GUGCGGUA-----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 20312 0.8 0.43196
Target:  5'- cGUGCCGGAcgaggagcucgucgaGACCGCGCUccgagacgAUGUAGAGGa -3'
miRNA:   3'- -UAUGGCCU---------------UUGGUGCGG--------UACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 21470 0.73 0.779944
Target:  5'- -cGCCGGGAGCgGCGCCc-GUAGAGc -3'
miRNA:   3'- uaUGGCCUUUGgUGCGGuaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 25943 0.69 0.922727
Target:  5'- -gGCCGGggGCCACgaggGCCucguaguaGCGGAGc -3'
miRNA:   3'- uaUGGCCuuUGGUG----CGGua------CGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 30272 0.69 0.933198
Target:  5'- -cGCgCGGAGcCgGCGCCAUGgaGGAGGc -3'
miRNA:   3'- uaUG-GCCUUuGgUGCGGUACg-UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 32567 0.66 0.988343
Target:  5'- -cGCCGGgcGCCGCGg-GUGCcGGGGu -3'
miRNA:   3'- uaUGGCCuuUGGUGCggUACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 33422 0.66 0.985187
Target:  5'- -aGCCGGAGAUguCGCC--GCAGcccAGGu -3'
miRNA:   3'- uaUGGCCUUUGguGCGGuaCGUC---UCC- -5'
9045 5' -53.6 NC_002512.2 + 34887 0.7 0.905252
Target:  5'- -cGCCGGGAccGCCGuCGCCcucuUGCgccgAGAGGa -3'
miRNA:   3'- uaUGGCCUU--UGGU-GCGGu---ACG----UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 34970 0.69 0.92808
Target:  5'- -gACCGGGuccggcugGGCCucGCGUCccGCGGAGGa -3'
miRNA:   3'- uaUGGCCU--------UUGG--UGCGGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 35907 0.66 0.988343
Target:  5'- -gAUUGGAAgcGCCcgguuGCGCCAUGuCGGAGu -3'
miRNA:   3'- uaUGGCCUU--UGG-----UGCGGUAC-GUCUCc -5'
9045 5' -53.6 NC_002512.2 + 39680 0.72 0.798098
Target:  5'- --cCCGGAcGACCGCGCCGccgaccuucUGCAGccGGGg -3'
miRNA:   3'- uauGGCCU-UUGGUGCGGU---------ACGUC--UCC- -5'
9045 5' -53.6 NC_002512.2 + 43582 0.66 0.979061
Target:  5'- uUGCCGauGACCACGgCGUcgcggacgaggacGCGGAGGc -3'
miRNA:   3'- uAUGGCcuUUGGUGCgGUA-------------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 43952 0.66 0.986838
Target:  5'- -gGCCGuccuGAAGCCcuucucguCGaCCcgGCAGAGGg -3'
miRNA:   3'- uaUGGC----CUUUGGu-------GC-GGuaCGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.