miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 229542 0.75 0.671653
Target:  5'- -cGCCgGGGAGCCgggcgggGCGCCG-GCGGAGGa -3'
miRNA:   3'- uaUGG-CCUUUGG-------UGCGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 228878 0.68 0.951324
Target:  5'- -cACCGGAGGCCGgGCgaGUGgaugAGAGGa -3'
miRNA:   3'- uaUGGCCUUUGGUgCGg-UACg---UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 228251 0.69 0.922178
Target:  5'- cGUGCCGGAcgcgggggcgacuGACCGCGgaCCGggugGgAGAGGg -3'
miRNA:   3'- -UAUGGCCU-------------UUGGUGC--GGUa---CgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 227968 0.68 0.951324
Target:  5'- -aGCCGGAGaggaggGCCccgGCGCCGaggGCcGAGGg -3'
miRNA:   3'- uaUGGCCUU------UGG---UGCGGUa--CGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 227910 0.69 0.921074
Target:  5'- -gGCCGGAGAcggacgcgccgccuCCgACGCCGgcggacgagGCGGGGGa -3'
miRNA:   3'- uaUGGCCUUU--------------GG-UGCGGUa--------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 226892 0.68 0.959012
Target:  5'- -gGCCcGGGACCGgGCCAcGCGGgAGGc -3'
miRNA:   3'- uaUGGcCUUUGGUgCGGUaCGUC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 226748 0.68 0.95528
Target:  5'- -gACCGGGcuCCG-GCCGgacgacGCGGAGGg -3'
miRNA:   3'- uaUGGCCUuuGGUgCGGUa-----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 226586 0.67 0.965822
Target:  5'- -gGCCaGGAGGgCGCgGCCcgGgGGAGGa -3'
miRNA:   3'- uaUGG-CCUUUgGUG-CGGuaCgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 224131 0.68 0.947141
Target:  5'- -gGCCGuGGAcCCGCGCCGggagGCGGAc- -3'
miRNA:   3'- uaUGGC-CUUuGGUGCGGUa---CGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 222668 0.66 0.984663
Target:  5'- -gGCCGaGGggcgccucgaguucGACUGCGCCcgGCAcGGGGa -3'
miRNA:   3'- uaUGGC-CU--------------UUGGUGCGGuaCGU-CUCC- -5'
9045 5' -53.6 NC_002512.2 + 222548 0.7 0.88501
Target:  5'- -gGCCGGGcuacggcgacccGACCGucccgccgcggccCGCCGUcGCGGAGGa -3'
miRNA:   3'- uaUGGCCU------------UUGGU-------------GCGGUA-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 222425 0.67 0.971793
Target:  5'- -gGCCGGcAGCCGCGCCGcgGCuucccccGGGc -3'
miRNA:   3'- uaUGGCCuUUGGUGCGGUa-CGuc-----UCC- -5'
9045 5' -53.6 NC_002512.2 + 222321 0.73 0.770667
Target:  5'- gGUACCGGAGGCUgcggcgGCGCCuccaGGAGGa -3'
miRNA:   3'- -UAUGGCCUUUGG------UGCGGuacgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 220591 0.67 0.974479
Target:  5'- aGUGCCGGGAuCCG-GUCGUGCGcGAGc -3'
miRNA:   3'- -UAUGGCCUUuGGUgCGGUACGU-CUCc -5'
9045 5' -53.6 NC_002512.2 + 220365 0.69 0.917136
Target:  5'- -gGCCGuGGccGCCGcCGCCGUGCuGGGGc -3'
miRNA:   3'- uaUGGC-CUu-UGGU-GCGGUACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 220318 0.71 0.87873
Target:  5'- -gGCCGGggGCCGgGCUc--CGGGGGg -3'
miRNA:   3'- uaUGGCCuuUGGUgCGGuacGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 217581 0.66 0.988343
Target:  5'- -aGCCGGuccGGCgGCGCCGccuCGGGGGu -3'
miRNA:   3'- uaUGGCCu--UUGgUGCGGUac-GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 215132 0.69 0.922727
Target:  5'- -gGCCGGGGuCCGCGCgAcgGgGGAGGc -3'
miRNA:   3'- uaUGGCCUUuGGUGCGgUa-CgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 214412 0.68 0.947141
Target:  5'- -gGCCGGAGcgcGCCGCGCCc----GAGGa -3'
miRNA:   3'- uaUGGCCUU---UGGUGCGGuacguCUCC- -5'
9045 5' -53.6 NC_002512.2 + 214161 0.7 0.885697
Target:  5'- cUACCGGGAccccuacgucgaGCC-CGUCAUcgucGCGGAGGa -3'
miRNA:   3'- uAUGGCCUU------------UGGuGCGGUA----CGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.