miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 97941 0.66 0.983383
Target:  5'- -cGCCGGGcaugagguuCUACGCUcccGUGCAGcAGGg -3'
miRNA:   3'- uaUGGCCUuu-------GGUGCGG---UACGUC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 32567 0.66 0.988343
Target:  5'- -cGCCGGgcGCCGCGg-GUGCcGGGGu -3'
miRNA:   3'- uaUGGCCuuUGGUGCggUACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 57324 0.66 0.981418
Target:  5'- -gGCgCGGAGGa-ACGUCAcGCAGGGGg -3'
miRNA:   3'- uaUG-GCCUUUggUGCGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 130503 0.66 0.979284
Target:  5'- -aGCCGGGcuGCgAgGCCGUGCGGuucGGc -3'
miRNA:   3'- uaUGGCCUu-UGgUgCGGUACGUCu--CC- -5'
9045 5' -53.6 NC_002512.2 + 43582 0.66 0.979061
Target:  5'- uUGCCGauGACCACGgCGUcgcggacgaggacGCGGAGGc -3'
miRNA:   3'- uAUGGCcuUUGGUGCgGUA-------------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 33422 0.66 0.985187
Target:  5'- -aGCCGGAGAUguCGCC--GCAGcccAGGu -3'
miRNA:   3'- uaUGGCCUUUGguGCGGuaCGUC---UCC- -5'
9045 5' -53.6 NC_002512.2 + 46741 0.66 0.988343
Target:  5'- -gGCgGGGAAgCGCGC---GCAGGGGa -3'
miRNA:   3'- uaUGgCCUUUgGUGCGguaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 43952 0.66 0.986838
Target:  5'- -gGCCGuccuGAAGCCcuucucguCGaCCcgGCAGAGGg -3'
miRNA:   3'- uaUGGC----CUUUGGu-------GC-GGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 86204 0.66 0.988343
Target:  5'- cGUGCCcGAcACCcCGCCcgGCuucggGGAGGg -3'
miRNA:   3'- -UAUGGcCUuUGGuGCGGuaCG-----UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 58067 0.66 0.988343
Target:  5'- gGUACCGGAuGCCGgGCa--GCAGGa- -3'
miRNA:   3'- -UAUGGCCUuUGGUgCGguaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 122077 0.66 0.985187
Target:  5'- -cAgCGGggGCUGCGaCAUGCGGAa- -3'
miRNA:   3'- uaUgGCCuuUGGUGCgGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 8854 0.66 0.987457
Target:  5'- cUGCCGGGcggcaccccguugguGGCCGCGUgGUGaCAGAa- -3'
miRNA:   3'- uAUGGCCU---------------UUGGUGCGgUAC-GUCUcc -5'
9045 5' -53.6 NC_002512.2 + 74614 0.66 0.980796
Target:  5'- -gACCGGAGcggagcgcgagaccGCCGCGCgAcgGCccGGGGGa -3'
miRNA:   3'- uaUGGCCUU--------------UGGUGCGgUa-CG--UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 57035 0.66 0.985187
Target:  5'- -gAgCGGAGGCCGCGuCCGacgacCGGGGGg -3'
miRNA:   3'- uaUgGCCUUUGGUGC-GGUac---GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 121129 0.66 0.988343
Target:  5'- -aGCCGGAucgcCCGCGCCGcGCAcugccuccgcGAGa -3'
miRNA:   3'- uaUGGCCUuu--GGUGCGGUaCGU----------CUCc -5'
9045 5' -53.6 NC_002512.2 + 140038 0.66 0.988343
Target:  5'- -cACCGcacgcaGAACCGgGCCGUGCAGcgcGGu -3'
miRNA:   3'- uaUGGCc-----UUUGGUgCGGUACGUCu--CC- -5'
9045 5' -53.6 NC_002512.2 + 49783 0.66 0.982025
Target:  5'- -gACaCGGggGCCgagguggACGCCAucgcggacgagaaacUGCGGAGa -3'
miRNA:   3'- uaUG-GCCuuUGG-------UGCGGU---------------ACGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 47493 0.66 0.981418
Target:  5'- -gGCCGGGgaGACgCugGCCAggacGCAGAc- -3'
miRNA:   3'- uaUGGCCU--UUG-GugCGGUa---CGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 62467 0.66 0.983383
Target:  5'- cGUGCCGccgcacGAGAUCgACGCCcuucAUGCAGAGc -3'
miRNA:   3'- -UAUGGC------CUUUGG-UGCGG----UACGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 114051 0.66 0.979284
Target:  5'- -gGCaGGGGcCCGCGUCGUGCAGcaccGGGu -3'
miRNA:   3'- uaUGgCCUUuGGUGCGGUACGUC----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.