miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 46095 0.68 0.95528
Target:  5'- --cCCGGGucACCGCGaCAaagGCGGAGGg -3'
miRNA:   3'- uauGGCCUu-UGGUGCgGUa--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 46362 0.67 0.976973
Target:  5'- -cGCCGGu--CCGCaGCCAgGC-GAGGa -3'
miRNA:   3'- uaUGGCCuuuGGUG-CGGUaCGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 46741 0.66 0.988343
Target:  5'- -gGCgGGGAAgCGCGC---GCAGGGGa -3'
miRNA:   3'- uaUGgCCUUUgGUGCGguaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 47371 0.74 0.722628
Target:  5'- -cACCGGAcGCUGCGgCGcGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuUGGUGCgGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 47430 0.69 0.922727
Target:  5'- cUGCCacGAGcACCACGCCcgcacgGCGGAGGc -3'
miRNA:   3'- uAUGGc-CUU-UGGUGCGGua----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 47493 0.66 0.981418
Target:  5'- -gGCCGGGgaGACgCugGCCAggacGCAGAc- -3'
miRNA:   3'- uaUGGCCU--UUG-GugCGGUa---CGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 48729 0.7 0.911311
Target:  5'- cUGCUGGAgGACCugGCC--GCGGAGu -3'
miRNA:   3'- uAUGGCCU-UUGGugCGGuaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 49783 0.66 0.982025
Target:  5'- -gACaCGGggGCCgagguggACGCCAucgcggacgagaaacUGCGGAGa -3'
miRNA:   3'- uaUG-GCCuuUGG-------UGCGGU---------------ACGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 51516 0.83 0.281593
Target:  5'- -gGCUGGAGAUCACGCCGU-CGGAGGa -3'
miRNA:   3'- uaUGGCCUUUGGUGCGGUAcGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 51646 0.78 0.521716
Target:  5'- --cCCGGAGACCGCGCCGUcccCGGAGa -3'
miRNA:   3'- uauGGCCUUUGGUGCGGUAc--GUCUCc -5'
9045 5' -53.6 NC_002512.2 + 53843 0.74 0.732425
Target:  5'- --cCCGGggGCgGCGCCGggaGgAGAGGg -3'
miRNA:   3'- uauGGCCuuUGgUGCGGUa--CgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 56053 0.66 0.988343
Target:  5'- ---aCGGAGGaccuCCugGCCAUGgAGAGc -3'
miRNA:   3'- uaugGCCUUU----GGugCGGUACgUCUCc -5'
9045 5' -53.6 NC_002512.2 + 56259 0.67 0.976973
Target:  5'- --cCCGGGGuUCGcCGCCGcgGCGGAGGc -3'
miRNA:   3'- uauGGCCUUuGGU-GCGGUa-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 57035 0.66 0.985187
Target:  5'- -gAgCGGAGGCCGCGuCCGacgacCGGGGGg -3'
miRNA:   3'- uaUgGCCUUUGGUGC-GGUac---GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 57324 0.66 0.981418
Target:  5'- -gGCgCGGAGGa-ACGUCAcGCAGGGGg -3'
miRNA:   3'- uaUG-GCCUUUggUGCGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 58067 0.66 0.988343
Target:  5'- gGUACCGGAuGCCGgGCa--GCAGGa- -3'
miRNA:   3'- -UAUGGCCUuUGGUgCGguaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 58337 0.69 0.92808
Target:  5'- -aACUGGuGAgCACGCCGUGCGaacAGGg -3'
miRNA:   3'- uaUGGCCuUUgGUGCGGUACGUc--UCC- -5'
9045 5' -53.6 NC_002512.2 + 60332 0.74 0.712753
Target:  5'- -cGCCGGcgaAGGCCACGCCGccggGCAGccGGGa -3'
miRNA:   3'- uaUGGCC---UUUGGUGCGGUa---CGUC--UCC- -5'
9045 5' -53.6 NC_002512.2 + 62467 0.66 0.983383
Target:  5'- cGUGCCGccgcacGAGAUCgACGCCcuucAUGCAGAGc -3'
miRNA:   3'- -UAUGGC------CUUUGG-UGCGG----UACGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 67078 0.71 0.871546
Target:  5'- -gGCCGGuugGACCGCGCCuUGguGAc- -3'
miRNA:   3'- uaUGGCCu--UUGGUGCGGuACguCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.