Results 41 - 60 of 295 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 97975 | 0.66 | 0.961404 |
Target: 5'- -----gGGGCGCCGGuACGCcccgGGGaCCUu -3' miRNA: 3'- ucauaaUCUGCGGCCuUGCG----CCC-GGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 194892 | 0.66 | 0.973362 |
Target: 5'- ----cUGG-UGCCcuucuccuccgcGGGACGCGaGGCCCa -3' miRNA: 3'- ucauaAUCuGCGG------------CCUUGCGC-CCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 205047 | 0.66 | 0.970663 |
Target: 5'- ------cGcCGaCCGGc-CGCGGGCCCg -3' miRNA: 3'- ucauaauCuGC-GGCCuuGCGCCCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 92043 | 0.66 | 0.967775 |
Target: 5'- -----aAGACGCgGGAGCuGCGagacGCCCu -3' miRNA: 3'- ucauaaUCUGCGgCCUUG-CGCc---CGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 131098 | 0.66 | 0.961404 |
Target: 5'- gGGUAccUGGACG-UGGuGCGcCGGGCCa -3' miRNA: 3'- -UCAUa-AUCUGCgGCCuUGC-GCCCGGg -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 95247 | 0.66 | 0.96469 |
Target: 5'- gAGg---GGGCGuCCGGAGggcCGCGcGGCUCc -3' miRNA: 3'- -UCauaaUCUGC-GGCCUU---GCGC-CCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 116716 | 0.66 | 0.967775 |
Target: 5'- ------cGACGCCGGu-CGCGucccGCCCg -3' miRNA: 3'- ucauaauCUGCGGCCuuGCGCc---CGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 50440 | 0.66 | 0.96469 |
Target: 5'- ------cGGCGCCGGAuguccagaagACGCcGGCCg -3' miRNA: 3'- ucauaauCUGCGGCCU----------UGCGcCCGGg -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 82483 | 0.66 | 0.970663 |
Target: 5'- -----cAGACGCCGuuuGACGCcGGUCCu -3' miRNA: 3'- ucauaaUCUGCGGCc--UUGCGcCCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 111370 | 0.66 | 0.970663 |
Target: 5'- -----cGGACGCCGGA----GGGCCUc -3' miRNA: 3'- ucauaaUCUGCGGCCUugcgCCCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 60819 | 0.66 | 0.967775 |
Target: 5'- ------cGACGCCGccgcCGCGGaGCCCc -3' miRNA: 3'- ucauaauCUGCGGCcuu-GCGCC-CGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 20630 | 0.66 | 0.967775 |
Target: 5'- -----aGGAgGuCCGGuucgccgaGCGGGCCCg -3' miRNA: 3'- ucauaaUCUgC-GGCCuug-----CGCCCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 153947 | 0.66 | 0.967775 |
Target: 5'- cGUucggGGACGUCGGGuucuuCG-GGGUCCg -3' miRNA: 3'- uCAuaa-UCUGCGGCCUu----GCgCCCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 21806 | 0.66 | 0.967775 |
Target: 5'- ------cGAgGCgGGAagucaGCGaCGGGCCCg -3' miRNA: 3'- ucauaauCUgCGgCCU-----UGC-GCCCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 60850 | 0.66 | 0.96469 |
Target: 5'- gAGg---AGAUGCCGGcgccgcuCGCGGacgccGCCCg -3' miRNA: 3'- -UCauaaUCUGCGGCCuu-----GCGCC-----CGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 128667 | 0.66 | 0.96469 |
Target: 5'- ------cGGCGCCGGAACccggcggaCGGGgCCg -3' miRNA: 3'- ucauaauCUGCGGCCUUGc-------GCCCgGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 31644 | 0.66 | 0.96469 |
Target: 5'- ----aUGGAgGCCgucccGGAcgGCGCGGGCgCg -3' miRNA: 3'- ucauaAUCUgCGG-----CCU--UGCGCCCGgG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 123577 | 0.66 | 0.96469 |
Target: 5'- ------cGACggGCUGG-ACGaCGGGCCCg -3' miRNA: 3'- ucauaauCUG--CGGCCuUGC-GCCCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 2522 | 0.66 | 0.96469 |
Target: 5'- ------cGACGCCGGcGGCccCGGGCCUc -3' miRNA: 3'- ucauaauCUGCGGCC-UUGc-GCCCGGG- -5' |
|||||||
9046 | 3' | -55.5 | NC_002512.2 | + | 120637 | 0.66 | 0.973362 |
Target: 5'- cGGgacgGGACGCCGGGgGCGCGGa--- -3' miRNA: 3'- -UCauaaUCUGCGGCCU-UGCGCCcggg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home