miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 60819 0.66 0.967775
Target:  5'- ------cGACGCCGccgcCGCGGaGCCCc -3'
miRNA:   3'- ucauaauCUGCGGCcuu-GCGCC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 131098 0.66 0.961404
Target:  5'- gGGUAccUGGACG-UGGuGCGcCGGGCCa -3'
miRNA:   3'- -UCAUa-AUCUGCgGCCuUGC-GCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 101659 0.66 0.961404
Target:  5'- ------cGGCgGCCGcGGACGcCGGGCCg -3'
miRNA:   3'- ucauaauCUG-CGGC-CUUGC-GCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 4198 0.66 0.960722
Target:  5'- -----aGGACGCCGGAGaucggugggagcggcCGCGGggagcgggacgucgaGCCCc -3'
miRNA:   3'- ucauaaUCUGCGGCCUU---------------GCGCC---------------CGGG- -5'
9046 3' -55.5 NC_002512.2 + 88574 0.66 0.961404
Target:  5'- uAGUGggAGAcgucgucgucgcCGCCGGugccgccguGCGCGcGGCCg -3'
miRNA:   3'- -UCAUaaUCU------------GCGGCCu--------UGCGC-CCGGg -5'
9046 3' -55.5 NC_002512.2 + 111370 0.66 0.970663
Target:  5'- -----cGGACGCCGGA----GGGCCUc -3'
miRNA:   3'- ucauaaUCUGCGGCCUugcgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 82304 0.66 0.967775
Target:  5'- cGGgcgUAG-CGCUGGGuguagagggcCGCGGGCCg -3'
miRNA:   3'- -UCauaAUCuGCGGCCUu---------GCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 153947 0.66 0.967775
Target:  5'- cGUucggGGACGUCGGGuucuuCG-GGGUCCg -3'
miRNA:   3'- uCAuaa-UCUGCGGCCUu----GCgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 116716 0.66 0.967775
Target:  5'- ------cGACGCCGGu-CGCGucccGCCCg -3'
miRNA:   3'- ucauaauCUGCGGCCuuGCGCc---CGGG- -5'
9046 3' -55.5 NC_002512.2 + 31644 0.66 0.96469
Target:  5'- ----aUGGAgGCCgucccGGAcgGCGCGGGCgCg -3'
miRNA:   3'- ucauaAUCUgCGG-----CCU--UGCGCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 21806 0.66 0.967775
Target:  5'- ------cGAgGCgGGAagucaGCGaCGGGCCCg -3'
miRNA:   3'- ucauaauCUgCGgCCU-----UGC-GCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 140757 0.66 0.970663
Target:  5'- -----aAGACGCCGuGugaGCaGGCCCu -3'
miRNA:   3'- ucauaaUCUGCGGC-CuugCGcCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 226750 0.66 0.970663
Target:  5'- -----gAGACGgCGGAgGCGUGcGGCCg -3'
miRNA:   3'- ucauaaUCUGCgGCCU-UGCGC-CCGGg -5'
9046 3' -55.5 NC_002512.2 + 30539 0.66 0.970101
Target:  5'- cGGUGaucucguuCGCCGuGGGCGCGG-CCCa -3'
miRNA:   3'- -UCAUaaucu---GCGGC-CUUGCGCCcGGG- -5'
9046 3' -55.5 NC_002512.2 + 102054 0.66 0.972572
Target:  5'- -----cGGACGCCgccgacgaccucccGGAGC-CGGGaCCCg -3'
miRNA:   3'- ucauaaUCUGCGG--------------CCUUGcGCCC-GGG- -5'
9046 3' -55.5 NC_002512.2 + 105848 0.66 0.96469
Target:  5'- uGUGgaAGugGUucauCGGGACGUGG-CCCa -3'
miRNA:   3'- uCAUaaUCugCG----GCCUUGCGCCcGGG- -5'
9046 3' -55.5 NC_002512.2 + 20630 0.66 0.967775
Target:  5'- -----aGGAgGuCCGGuucgccgaGCGGGCCCg -3'
miRNA:   3'- ucauaaUCUgC-GGCCuug-----CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 128667 0.66 0.96469
Target:  5'- ------cGGCGCCGGAACccggcggaCGGGgCCg -3'
miRNA:   3'- ucauaauCUGCGGCCUUGc-------GCCCgGG- -5'
9046 3' -55.5 NC_002512.2 + 82483 0.66 0.970663
Target:  5'- -----cAGACGCCGuuuGACGCcGGUCCu -3'
miRNA:   3'- ucauaaUCUGCGGCc--UUGCGcCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 120637 0.66 0.973362
Target:  5'- cGGgacgGGACGCCGGGgGCGCGGa--- -3'
miRNA:   3'- -UCauaaUCUGCGGCCU-UGCGCCcggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.