miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 92087 0.74 0.63955
Target:  5'- -----cGGcCGCCGG-ACGCGcGGCCCg -3'
miRNA:   3'- ucauaaUCuGCGGCCuUGCGC-CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 52744 0.74 0.659371
Target:  5'- -----gAGACGCUGcagcaGAacGCGCGGGCCCu -3'
miRNA:   3'- ucauaaUCUGCGGC-----CU--UGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 135027 0.74 0.659371
Target:  5'- ------cGACGCCaGGAuCGgGGGCCCg -3'
miRNA:   3'- ucauaauCUGCGG-CCUuGCgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 84229 0.74 0.659371
Target:  5'- -----cAGACGaagaGcGAGCGCGGGCCCg -3'
miRNA:   3'- ucauaaUCUGCgg--C-CUUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 214622 0.74 0.659371
Target:  5'- gAGg---GGAcccuCGCgGGGACGCGGGCCg -3'
miRNA:   3'- -UCauaaUCU----GCGgCCUUGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 205645 0.73 0.67911
Target:  5'- cGGg---GGACGCCGucg-GCGGGCCCg -3'
miRNA:   3'- -UCauaaUCUGCGGCcuugCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 122793 0.73 0.67911
Target:  5'- -----aGGGCGCCGGGcccugGCgGCGGGUCCc -3'
miRNA:   3'- ucauaaUCUGCGGCCU-----UG-CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 157075 0.73 0.67911
Target:  5'- gGGUccgGGGuCGCCGGcGCccacgGCGGGCCCg -3'
miRNA:   3'- -UCAuaaUCU-GCGGCCuUG-----CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 156515 0.73 0.688929
Target:  5'- ----cUGGGCGgCGGGGCGCggGGGUCCg -3'
miRNA:   3'- ucauaAUCUGCgGCCUUGCG--CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 88445 0.73 0.688929
Target:  5'- -----cGGACGUCGGAccgaGCGgGGGCUCg -3'
miRNA:   3'- ucauaaUCUGCGGCCU----UGCgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 8324 0.73 0.698704
Target:  5'- aGGgccgGGA-GCCGGAGacCGCGGGUCCg -3'
miRNA:   3'- -UCauaaUCUgCGGCCUU--GCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 30425 0.73 0.698704
Target:  5'- -----cGGGCGUCGucgcggcccuGAACGCGGGCCUg -3'
miRNA:   3'- ucauaaUCUGCGGC----------CUUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 71549 0.73 0.708426
Target:  5'- gGGUGUcgaAGACGguCCGGAGCGCGGaCUCg -3'
miRNA:   3'- -UCAUAa--UCUGC--GGCCUUGCGCCcGGG- -5'
9046 3' -55.5 NC_002512.2 + 31805 0.73 0.708426
Target:  5'- gGGg---AGACGCCGGGGCGC-GGUCg -3'
miRNA:   3'- -UCauaaUCUGCGGCCUUGCGcCCGGg -5'
9046 3' -55.5 NC_002512.2 + 106986 0.73 0.718087
Target:  5'- ----gUAGAagGCCGGGACGCccGGGCCg -3'
miRNA:   3'- ucauaAUCUg-CGGCCUUGCG--CCCGGg -5'
9046 3' -55.5 NC_002512.2 + 211342 0.73 0.718087
Target:  5'- -----cGGGCGCUGGGggacGCGCGcGGCCUg -3'
miRNA:   3'- ucauaaUCUGCGGCCU----UGCGC-CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 185492 0.72 0.72768
Target:  5'- aGGUcaUGGcgcACGCCGGGcugcGCGgGGGCCUg -3'
miRNA:   3'- -UCAuaAUC---UGCGGCCU----UGCgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 195691 0.72 0.72768
Target:  5'- cGUGUUGGACGuCCGGGACG-GGGa-- -3'
miRNA:   3'- uCAUAAUCUGC-GGCCUUGCgCCCggg -5'
9046 3' -55.5 NC_002512.2 + 179 0.72 0.72768
Target:  5'- -----aGGAgGCCGGAggGCGUGGGCUg -3'
miRNA:   3'- ucauaaUCUgCGGCCU--UGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 115103 0.72 0.72768
Target:  5'- -----gGGACGUCGGGACGCcGuGCCCc -3'
miRNA:   3'- ucauaaUCUGCGGCCUUGCGcC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.