miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 214412 0.66 0.970663
Target:  5'- ---------gGCCGGAGCGCGccgcGCCCg -3'
miRNA:   3'- ucauaaucugCGGCCUUGCGCc---CGGG- -5'
9046 3' -55.5 NC_002512.2 + 204978 0.66 0.970663
Target:  5'- ------cGACGCCGcGGGCGaCGGGgaCCg -3'
miRNA:   3'- ucauaauCUGCGGC-CUUGC-GCCCg-GG- -5'
9046 3' -55.5 NC_002512.2 + 30539 0.66 0.970101
Target:  5'- cGGUGaucucguuCGCCGuGGGCGCGG-CCCa -3'
miRNA:   3'- -UCAUaaucu---GCGGC-CUUGCGCCcGGG- -5'
9046 3' -55.5 NC_002512.2 + 133902 0.66 0.969817
Target:  5'- ------cGGCGCCGGAcgccgaccgccgcuGCGCcaacccGGGCCUc -3'
miRNA:   3'- ucauaauCUGCGGCCU--------------UGCG------CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 116716 0.66 0.967775
Target:  5'- ------cGACGCCGGu-CGCGucccGCCCg -3'
miRNA:   3'- ucauaauCUGCGGCCuuGCGCc---CGGG- -5'
9046 3' -55.5 NC_002512.2 + 20630 0.66 0.967775
Target:  5'- -----aGGAgGuCCGGuucgccgaGCGGGCCCg -3'
miRNA:   3'- ucauaaUCUgC-GGCCuug-----CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 224154 0.66 0.967775
Target:  5'- -----cGGACGCgugaggCGGGGCGgGGGCgCg -3'
miRNA:   3'- ucauaaUCUGCG------GCCUUGCgCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 92043 0.66 0.967775
Target:  5'- -----aAGACGCgGGAGCuGCGagacGCCCu -3'
miRNA:   3'- ucauaaUCUGCGgCCUUG-CGCc---CGGG- -5'
9046 3' -55.5 NC_002512.2 + 21806 0.66 0.967775
Target:  5'- ------cGAgGCgGGAagucaGCGaCGGGCCCg -3'
miRNA:   3'- ucauaauCUgCGgCCU-----UGC-GCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 153947 0.66 0.967775
Target:  5'- cGUucggGGACGUCGGGuucuuCG-GGGUCCg -3'
miRNA:   3'- uCAuaa-UCUGCGGCCUu----GCgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 60819 0.66 0.967775
Target:  5'- ------cGACGCCGccgcCGCGGaGCCCc -3'
miRNA:   3'- ucauaauCUGCGGCcuu-GCGCC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 82304 0.66 0.967775
Target:  5'- cGGgcgUAG-CGCUGGGuguagagggcCGCGGGCCg -3'
miRNA:   3'- -UCauaAUCuGCGGCCUu---------GCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 22518 0.66 0.96687
Target:  5'- cGUGg-GGACGCC-GAACGCgucggugucgaucgGGGCCg -3'
miRNA:   3'- uCAUaaUCUGCGGcCUUGCG--------------CCCGGg -5'
9046 3' -55.5 NC_002512.2 + 95247 0.66 0.96469
Target:  5'- gAGg---GGGCGuCCGGAGggcCGCGcGGCUCc -3'
miRNA:   3'- -UCauaaUCUGC-GGCCUU---GCGC-CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 31644 0.66 0.96469
Target:  5'- ----aUGGAgGCCgucccGGAcgGCGCGGGCgCg -3'
miRNA:   3'- ucauaAUCUgCGG-----CCU--UGCGCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 2522 0.66 0.96469
Target:  5'- ------cGACGCCGGcGGCccCGGGCCUc -3'
miRNA:   3'- ucauaauCUGCGGCC-UUGc-GCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 60850 0.66 0.96469
Target:  5'- gAGg---AGAUGCCGGcgccgcuCGCGGacgccGCCCg -3'
miRNA:   3'- -UCauaaUCUGCGGCCuu-----GCGCC-----CGGG- -5'
9046 3' -55.5 NC_002512.2 + 50440 0.66 0.96469
Target:  5'- ------cGGCGCCGGAuguccagaagACGCcGGCCg -3'
miRNA:   3'- ucauaauCUGCGGCCU----------UGCGcCCGGg -5'
9046 3' -55.5 NC_002512.2 + 128667 0.66 0.96469
Target:  5'- ------cGGCGCCGGAACccggcggaCGGGgCCg -3'
miRNA:   3'- ucauaauCUGCGGCCUUGc-------GCCCgGG- -5'
9046 3' -55.5 NC_002512.2 + 105848 0.66 0.96469
Target:  5'- uGUGgaAGugGUucauCGGGACGUGG-CCCa -3'
miRNA:   3'- uCAUaaUCugCG----GCCUUGCGCCcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.