miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 8105 0.67 0.946159
Target:  5'- cGUAgagcAGGCGCCaGGAcACGaCGGccGCCCa -3'
miRNA:   3'- uCAUaa--UCUGCGG-CCU-UGC-GCC--CGGG- -5'
9046 3' -55.5 NC_002512.2 + 8324 0.73 0.698704
Target:  5'- aGGgccgGGA-GCCGGAGacCGCGGGUCCg -3'
miRNA:   3'- -UCauaaUCUgCGGCCUU--GCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 8359 0.67 0.950293
Target:  5'- cGGUAggcgGGAgCGCCGaGGAucCGCGGcGCCg -3'
miRNA:   3'- -UCAUaa--UCU-GCGGC-CUU--GCGCC-CGGg -5'
9046 3' -55.5 NC_002512.2 + 8790 0.7 0.850073
Target:  5'- gAGg---AGGCGCCGGAGgGCGucCCCc -3'
miRNA:   3'- -UCauaaUCUGCGGCCUUgCGCccGGG- -5'
9046 3' -55.5 NC_002512.2 + 8824 0.67 0.954209
Target:  5'- ------cGcCGCCGGAGCuuGGGCCa -3'
miRNA:   3'- ucauaauCuGCGGCCUUGcgCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 10546 0.75 0.609795
Target:  5'- -----cGGACGCCGGGcaGCcgGCGGGCCa -3'
miRNA:   3'- ucauaaUCUGCGGCCU--UG--CGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 10954 0.7 0.857653
Target:  5'- -----aGGACGCCGGcGCccuCGGGCCa -3'
miRNA:   3'- ucauaaUCUGCGGCCuUGc--GCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 11444 0.78 0.457309
Target:  5'- -----gGGACGCCGcGGACGgGGGCCg -3'
miRNA:   3'- ucauaaUCUGCGGC-CUUGCgCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 11636 0.68 0.916687
Target:  5'- uGGUGgaGGACGCCgacccGGAcauauaucgGCGcCGcGGCCCg -3'
miRNA:   3'- -UCAUaaUCUGCGG-----CCU---------UGC-GC-CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 12410 0.68 0.92216
Target:  5'- ------cGGCGCCGGGAuCGCGaGCUCg -3'
miRNA:   3'- ucauaauCUGCGGCCUU-GCGCcCGGG- -5'
9046 3' -55.5 NC_002512.2 + 14325 0.69 0.905071
Target:  5'- cGUAgacGACGCCGaGGGCGCcgacGGCCa -3'
miRNA:   3'- uCAUaauCUGCGGC-CUUGCGc---CCGGg -5'
9046 3' -55.5 NC_002512.2 + 15225 0.7 0.850073
Target:  5'- gGGUcgccgAGGCGCCGGGAggagagacUGCGaggcGGCCCg -3'
miRNA:   3'- -UCAuaa--UCUGCGGCCUU--------GCGC----CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 15558 0.67 0.957912
Target:  5'- -----aGGAgGCCGGAGuCGUcGGCCUg -3'
miRNA:   3'- ucauaaUCUgCGGCCUU-GCGcCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 16093 0.67 0.957912
Target:  5'- aGGUAcaAGACGUucUGaGAGCGagauGGGCCCu -3'
miRNA:   3'- -UCAUaaUCUGCG--GC-CUUGCg---CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 17026 0.66 0.961404
Target:  5'- gAGgaggGGACGCUcggagGGGACGgaCGGcGCCCg -3'
miRNA:   3'- -UCauaaUCUGCGG-----CCUUGC--GCC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 17860 0.66 0.970663
Target:  5'- -----cGGGCG-CGGugcucGCGCaGGGCCCg -3'
miRNA:   3'- ucauaaUCUGCgGCCu----UGCG-CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 19058 0.7 0.850073
Target:  5'- -----cAGACGgccgugucccaCCGGAGCGCGaGCCCg -3'
miRNA:   3'- ucauaaUCUGC-----------GGCCUUGCGCcCGGG- -5'
9046 3' -55.5 NC_002512.2 + 19354 0.69 0.886005
Target:  5'- ------cGAUGCCGGAccguCGgGGGCUCg -3'
miRNA:   3'- ucauaauCUGCGGCCUu---GCgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 20630 0.66 0.967775
Target:  5'- -----aGGAgGuCCGGuucgccgaGCGGGCCCg -3'
miRNA:   3'- ucauaaUCUgC-GGCCuug-----CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 20773 0.67 0.953827
Target:  5'- cAGUcccGGACGUCGGGACaCGGGgugacgaCCCg -3'
miRNA:   3'- -UCAuaaUCUGCGGCCUUGcGCCC-------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.