miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 54 0.68 0.927408
Target:  5'- gGGgcuUUGcGGCGUCGGu-CGCGGGCgCg -3'
miRNA:   3'- -UCau-AAU-CUGCGGCCuuGCGCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 150 0.67 0.957912
Target:  5'- cGGgcg-GGGCGCCggcggaGGAGCGCGcGCCg -3'
miRNA:   3'- -UCauaaUCUGCGG------CCUUGCGCcCGGg -5'
9046 3' -55.5 NC_002512.2 + 179 0.72 0.72768
Target:  5'- -----aGGAgGCCGGAggGCGUGGGCUg -3'
miRNA:   3'- ucauaaUCUgCGGCCU--UGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 2055 0.72 0.765189
Target:  5'- cGgcUgcGGCGCCagcgGGAGCGCGGaGUCCa -3'
miRNA:   3'- uCauAauCUGCGG----CCUUGCGCC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 2522 0.66 0.96469
Target:  5'- ------cGACGCCGGcGGCccCGGGCCUc -3'
miRNA:   3'- ucauaauCUGCGGCC-UUGc-GCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 2816 0.76 0.5606
Target:  5'- -----gGGAC-CCGGcgcgGGCGCGGGCCCg -3'
miRNA:   3'- ucauaaUCUGcGGCC----UUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 3250 0.66 0.961404
Target:  5'- ------uGACGaCGGucCGCGGGCUCg -3'
miRNA:   3'- ucauaauCUGCgGCCuuGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 4198 0.66 0.960722
Target:  5'- -----aGGACGCCGGAGaucggugggagcggcCGCGGggagcgggacgucgaGCCCc -3'
miRNA:   3'- ucauaaUCUGCGGCCUU---------------GCGCC---------------CGGG- -5'
9046 3' -55.5 NC_002512.2 + 4446 0.69 0.892576
Target:  5'- gGGUGccGGGCGCgGGGgucgGCGUcGGCCCc -3'
miRNA:   3'- -UCAUaaUCUGCGgCCU----UGCGcCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 4576 0.69 0.886005
Target:  5'- cGUcugGGGCGgCGGAGgaggcggcgcCGCGGGCCg -3'
miRNA:   3'- uCAuaaUCUGCgGCCUU----------GCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 4830 0.69 0.872233
Target:  5'- cGUGUUGcGCGCCgccgaGGAGCGC-GGCCa -3'
miRNA:   3'- uCAUAAUcUGCGG-----CCUUGCGcCCGGg -5'
9046 3' -55.5 NC_002512.2 + 5084 0.69 0.905071
Target:  5'- uGGUcgUcGuCGCCGGcgucGGCGCGGGCg- -3'
miRNA:   3'- -UCAuaAuCuGCGGCC----UUGCGCCCGgg -5'
9046 3' -55.5 NC_002512.2 + 5505 0.67 0.946159
Target:  5'- -------cGCGCCGGGGuCGCGaGGUCCc -3'
miRNA:   3'- ucauaaucUGCGGCCUU-GCGC-CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 5897 0.68 0.916687
Target:  5'- -cUcgUGGACGgCGGGGCGCGcgggggauacGGCCa -3'
miRNA:   3'- ucAuaAUCUGCgGCCUUGCGC----------CCGGg -5'
9046 3' -55.5 NC_002512.2 + 6344 0.67 0.93723
Target:  5'- -----cGGGCGCgGGGcCgGCGGGCCg -3'
miRNA:   3'- ucauaaUCUGCGgCCUuG-CGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 6521 0.78 0.430902
Target:  5'- cGUGaUAGACGCCGGAucgGCGGGCg- -3'
miRNA:   3'- uCAUaAUCUGCGGCCUug-CGCCCGgg -5'
9046 3' -55.5 NC_002512.2 + 6948 0.67 0.950694
Target:  5'- ----gUAGAgGCCGGccaggucguuggccCGCGGGCCg -3'
miRNA:   3'- ucauaAUCUgCGGCCuu------------GCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 7293 0.66 0.974389
Target:  5'- -----cGGGgGCCGGAcaggccuccuccgcgACgGCGGGCCg -3'
miRNA:   3'- ucauaaUCUgCGGCCU---------------UG-CGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 7704 0.68 0.916687
Target:  5'- ------cGACGCCGGc-CGCGG-CCCg -3'
miRNA:   3'- ucauaauCUGCGGCCuuGCGCCcGGG- -5'
9046 3' -55.5 NC_002512.2 + 7721 0.67 0.953057
Target:  5'- cGGgagUAGGCGUCGGGAUagcgguccucggggGCGGaGCCg -3'
miRNA:   3'- -UCauaAUCUGCGGCCUUG--------------CGCC-CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.