miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 229582 0.72 0.72768
Target:  5'- -----aGGAgGCCGGAggGCGUGGGCUg -3'
miRNA:   3'- ucauaaUCUgCGGCCU--UGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 229553 0.67 0.957912
Target:  5'- cGGgcg-GGGCGCCggcggaGGAGCGCGcGCCg -3'
miRNA:   3'- -UCauaaUCUGCGG------CCUUGCGCcCGGg -5'
9046 3' -55.5 NC_002512.2 + 229458 0.68 0.927408
Target:  5'- gGGgcuUUGcGGCGUCGGu-CGCGGGCgCg -3'
miRNA:   3'- -UCau-AAU-CUGCGGCCuuGCGCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 228410 0.68 0.932431
Target:  5'- gGGgacgGGGCGCUGGGggGCGgGGGCg- -3'
miRNA:   3'- -UCauaaUCUGCGGCCU--UGCgCCCGgg -5'
9046 3' -55.5 NC_002512.2 + 228130 0.71 0.792184
Target:  5'- cGUGcUGGGCGCCGacGGGCGCGaGCUCa -3'
miRNA:   3'- uCAUaAUCUGCGGC--CUUGCGCcCGGG- -5'
9046 3' -55.5 NC_002512.2 + 227642 0.7 0.826243
Target:  5'- -----cAGGCGaCGGAGCGCccGGGUCCg -3'
miRNA:   3'- ucauaaUCUGCgGCCUUGCG--CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 227427 0.67 0.954209
Target:  5'- -------cGCGCgCGG-GCGCGGGCCg -3'
miRNA:   3'- ucauaaucUGCG-GCCuUGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 226890 0.67 0.946159
Target:  5'- -----aAGGC-CCGGGAC-CGGGCCa -3'
miRNA:   3'- ucauaaUCUGcGGCCUUGcGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 226750 0.66 0.970663
Target:  5'- -----gAGACGgCGGAgGCGUGcGGCCg -3'
miRNA:   3'- ucauaaUCUGCgGCCU-UGCGC-CCGGg -5'
9046 3' -55.5 NC_002512.2 + 226739 0.67 0.954209
Target:  5'- ------cGACGgCGGGAC-CGGGCuCCg -3'
miRNA:   3'- ucauaauCUGCgGCCUUGcGCCCG-GG- -5'
9046 3' -55.5 NC_002512.2 + 226487 0.69 0.886005
Target:  5'- -----aAGACGCCgugguccucugGGGACcuGUGGGCCCc -3'
miRNA:   3'- ucauaaUCUGCGG-----------CCUUG--CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 226478 0.68 0.92216
Target:  5'- -----aGGAgGCCGGGGCcCGGGCgCu -3'
miRNA:   3'- ucauaaUCUgCGGCCUUGcGCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 224600 0.7 0.842307
Target:  5'- -----aGGGCG-CGGGACGCGGuGCCg -3'
miRNA:   3'- ucauaaUCUGCgGCCUUGCGCC-CGGg -5'
9046 3' -55.5 NC_002512.2 + 224351 0.69 0.905072
Target:  5'- -------cGCGCCGGGGuCGCGGGCg- -3'
miRNA:   3'- ucauaaucUGCGGCCUU-GCGCCCGgg -5'
9046 3' -55.5 NC_002512.2 + 224206 0.68 0.91099
Target:  5'- -----cGGACGCgGGGACGCcgGGGCg- -3'
miRNA:   3'- ucauaaUCUGCGgCCUUGCG--CCCGgg -5'
9046 3' -55.5 NC_002512.2 + 224154 0.66 0.967775
Target:  5'- -----cGGACGCgugaggCGGGGCGgGGGCgCg -3'
miRNA:   3'- ucauaaUCUGCG------GCCUUGCgCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 223207 0.66 0.96469
Target:  5'- -----gGGACGgcgucCCGGAGCGCGucccGGCCg -3'
miRNA:   3'- ucauaaUCUGC-----GGCCUUGCGC----CCGGg -5'
9046 3' -55.5 NC_002512.2 + 222920 0.68 0.92216
Target:  5'- ----cUGGAgGCuCGGccCGCGGGCCa -3'
miRNA:   3'- ucauaAUCUgCG-GCCuuGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 221605 0.68 0.927408
Target:  5'- gGGUcggUGGACGgCGaGGAgggaGCGGGUCCa -3'
miRNA:   3'- -UCAua-AUCUGCgGC-CUUg---CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 221442 0.69 0.879222
Target:  5'- -----cGGACcgcgGCCGGGGCGCGGucGUCCg -3'
miRNA:   3'- ucauaaUCUG----CGGCCUUGCGCC--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.