miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 60850 0.66 0.96469
Target:  5'- gAGg---AGAUGCCGGcgccgcuCGCGGacgccGCCCg -3'
miRNA:   3'- -UCauaaUCUGCGGCCuu-----GCGCC-----CGGG- -5'
9046 3' -55.5 NC_002512.2 + 31644 0.66 0.96469
Target:  5'- ----aUGGAgGCCgucccGGAcgGCGCGGGCgCg -3'
miRNA:   3'- ucauaAUCUgCGG-----CCU--UGCGCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 2522 0.66 0.96469
Target:  5'- ------cGACGCCGGcGGCccCGGGCCUc -3'
miRNA:   3'- ucauaauCUGCGGCC-UUGc-GCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 40449 0.66 0.961404
Target:  5'- uGGUAgucGGugGCCauGGCgGCGGGUCCc -3'
miRNA:   3'- -UCAUaa-UCugCGGccUUG-CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 124993 0.66 0.961404
Target:  5'- -----aGGGCGUCGGAGUGCaucgGGGCCa -3'
miRNA:   3'- ucauaaUCUGCGGCCUUGCG----CCCGGg -5'
9046 3' -55.5 NC_002512.2 + 3250 0.66 0.961404
Target:  5'- ------uGACGaCGGucCGCGGGCUCg -3'
miRNA:   3'- ucauaauCUGCgGCCuuGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 88574 0.66 0.961404
Target:  5'- uAGUGggAGAcgucgucgucgcCGCCGGugccgccguGCGCGcGGCCg -3'
miRNA:   3'- -UCAUaaUCU------------GCGGCCu--------UGCGC-CCGGg -5'
9046 3' -55.5 NC_002512.2 + 131098 0.66 0.961404
Target:  5'- gGGUAccUGGACG-UGGuGCGcCGGGCCa -3'
miRNA:   3'- -UCAUa-AUCUGCgGCCuUGC-GCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 95247 0.66 0.96469
Target:  5'- gAGg---GGGCGuCCGGAGggcCGCGcGGCUCc -3'
miRNA:   3'- -UCauaaUCUGC-GGCCUU---GCGC-CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 97975 0.66 0.961404
Target:  5'- -----gGGGCGCCGGuACGCcccgGGGaCCUu -3'
miRNA:   3'- ucauaaUCUGCGGCCuUGCG----CCC-GGG- -5'
9046 3' -55.5 NC_002512.2 + 130232 0.66 0.961404
Target:  5'- -----gAGcUGCCGGGgaucggcucggGCGcCGGGCCCu -3'
miRNA:   3'- ucauaaUCuGCGGCCU-----------UGC-GCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 17026 0.66 0.961404
Target:  5'- gAGgaggGGACGCUcggagGGGACGgaCGGcGCCCg -3'
miRNA:   3'- -UCauaaUCUGCGG-----CCUUGC--GCC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 50440 0.66 0.96469
Target:  5'- ------cGGCGCCGGAuguccagaagACGCcGGCCg -3'
miRNA:   3'- ucauaauCUGCGGCCU----------UGCGcCCGGg -5'
9046 3' -55.5 NC_002512.2 + 128667 0.66 0.96469
Target:  5'- ------cGGCGCCGGAACccggcggaCGGGgCCg -3'
miRNA:   3'- ucauaauCUGCGGCCUUGc-------GCCCgGG- -5'
9046 3' -55.5 NC_002512.2 + 60800 0.66 0.961404
Target:  5'- -----aGGACGa--GGACGCGGGCCg -3'
miRNA:   3'- ucauaaUCUGCggcCUUGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 101659 0.66 0.961404
Target:  5'- ------cGGCgGCCGcGGACGcCGGGCCg -3'
miRNA:   3'- ucauaauCUG-CGGC-CUUGC-GCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 4198 0.66 0.960722
Target:  5'- -----aGGACGCCGGAGaucggugggagcggcCGCGGggagcgggacgucgaGCCCc -3'
miRNA:   3'- ucauaaUCUGCGGCCUU---------------GCGCC---------------CGGG- -5'
9046 3' -55.5 NC_002512.2 + 105848 0.66 0.96469
Target:  5'- uGUGgaAGugGUucauCGGGACGUGG-CCCa -3'
miRNA:   3'- uCAUaaUCugCG----GCCUUGCGCCcGGG- -5'
9046 3' -55.5 NC_002512.2 + 151852 0.66 0.961404
Target:  5'- cGUGUcGGACacgcgaCCGGAugacuCGUGGGCgCCg -3'
miRNA:   3'- uCAUAaUCUGc-----GGCCUu----GCGCCCG-GG- -5'
9046 3' -55.5 NC_002512.2 + 111981 0.66 0.96469
Target:  5'- cGUGgc--GCGCUGGccguggagcAGCGaCGGGCCCc -3'
miRNA:   3'- uCAUaaucUGCGGCC---------UUGC-GCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.