miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 97229 0.72 0.736246
Target:  5'- cGUcg-AGGCGCUGGGAgaggagcUGCGGGCCg -3'
miRNA:   3'- uCAuaaUCUGCGGCCUU-------GCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 88445 0.73 0.688929
Target:  5'- -----cGGACGUCGGAccgaGCGgGGGCUCg -3'
miRNA:   3'- ucauaaUCUGCGGCCU----UGCgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 8324 0.73 0.698704
Target:  5'- aGGgccgGGA-GCCGGAGacCGCGGGUCCg -3'
miRNA:   3'- -UCauaaUCUgCGGCCUU--GCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 30425 0.73 0.698704
Target:  5'- -----cGGGCGUCGucgcggcccuGAACGCGGGCCUg -3'
miRNA:   3'- ucauaaUCUGCGGC----------CUUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 31805 0.73 0.708426
Target:  5'- gGGg---AGACGCCGGGGCGC-GGUCg -3'
miRNA:   3'- -UCauaaUCUGCGGCCUUGCGcCCGGg -5'
9046 3' -55.5 NC_002512.2 + 71549 0.73 0.708426
Target:  5'- gGGUGUcgaAGACGguCCGGAGCGCGGaCUCg -3'
miRNA:   3'- -UCAUAa--UCUGC--GGCCUUGCGCCcGGG- -5'
9046 3' -55.5 NC_002512.2 + 179 0.72 0.72768
Target:  5'- -----aGGAgGCCGGAggGCGUGGGCUg -3'
miRNA:   3'- ucauaaUCUgCGGCCU--UGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 115103 0.72 0.72768
Target:  5'- -----gGGACGUCGGGACGCcGuGCCCc -3'
miRNA:   3'- ucauaaUCUGCGGCCUUGCGcC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 229582 0.72 0.72768
Target:  5'- -----aGGAgGCCGGAggGCGUGGGCUg -3'
miRNA:   3'- ucauaaUCUgCGGCCU--UGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 122793 0.73 0.67911
Target:  5'- -----aGGGCGCCGGGcccugGCgGCGGGUCCc -3'
miRNA:   3'- ucauaaUCUGCGGCCU-----UG-CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 52744 0.74 0.659371
Target:  5'- -----gAGACGCUGcagcaGAacGCGCGGGCCCu -3'
miRNA:   3'- ucauaaUCUGCGGC-----CU--UGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 84229 0.74 0.659371
Target:  5'- -----cAGACGaagaGcGAGCGCGGGCCCg -3'
miRNA:   3'- ucauaaUCUGCgg--C-CUUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 24209 0.78 0.448409
Target:  5'- cAGgacgguGACGCCGGAgcuguccgagGCGuCGGGCCCg -3'
miRNA:   3'- -UCauaau-CUGCGGCCU----------UGC-GCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 11444 0.78 0.457309
Target:  5'- -----gGGACGCCGcGGACGgGGGCCg -3'
miRNA:   3'- ucauaaUCUGCGGC-CUUGCgCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 2816 0.76 0.5606
Target:  5'- -----gGGAC-CCGGcgcgGGCGCGGGCCCg -3'
miRNA:   3'- ucauaaUCUGcGGCC----UUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 80701 0.75 0.570369
Target:  5'- ------cGGCGuCCGGGgggcgagggcGCGCGGGCCCg -3'
miRNA:   3'- ucauaauCUGC-GGCCU----------UGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 86281 0.75 0.590024
Target:  5'- -------aACGCCGGAGaCGgGGGCCCg -3'
miRNA:   3'- ucauaaucUGCGGCCUU-GCgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 111802 0.75 0.590024
Target:  5'- gGGuUGUUGGuCGCCGcGAACgucuGCGGGUCCg -3'
miRNA:   3'- -UC-AUAAUCuGCGGC-CUUG----CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 10546 0.75 0.609795
Target:  5'- -----cGGACGCCGGGcaGCcgGCGGGCCa -3'
miRNA:   3'- ucauaaUCUGCGGCCU--UG--CGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 21467 0.75 0.609795
Target:  5'- ------cGGCGCCGGGA-GCGGcGCCCg -3'
miRNA:   3'- ucauaauCUGCGGCCUUgCGCC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.