miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 190752 0.66 0.974389
Target:  5'- -----cGGAgGCCGGGACGCucuucuacguggaccGGGUCa -3'
miRNA:   3'- ucauaaUCUgCGGCCUUGCG---------------CCCGGg -5'
9046 3' -55.5 NC_002512.2 + 133309 0.66 0.964049
Target:  5'- -----aAGACGCCGGcgaucuuccuguaGAUGCGGagaugcucccgccGCCCg -3'
miRNA:   3'- ucauaaUCUGCGGCC-------------UUGCGCC-------------CGGG- -5'
9046 3' -55.5 NC_002512.2 + 213226 0.66 0.961404
Target:  5'- gGGUcgUGGccgccaacgGCGCCGGccggaucuGCGUcuacgacaugGGGCCCg -3'
miRNA:   3'- -UCAuaAUC---------UGCGGCCu-------UGCG----------CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 147166 1.12 0.003257
Target:  5'- cAGUAUUAGACGCCGGAACGCGGGCCCg -3'
miRNA:   3'- -UCAUAAUCUGCGGCCUUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 109055 0.66 0.973362
Target:  5'- cGGg---GGACGaCCGGAcccgccGCGUcccGGGUCCg -3'
miRNA:   3'- -UCauaaUCUGC-GGCCU------UGCG---CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 171173 0.66 0.970663
Target:  5'- ------cGACGCUauGGAacuccagaagaACGCGGGCgCCg -3'
miRNA:   3'- ucauaauCUGCGG--CCU-----------UGCGCCCG-GG- -5'
9046 3' -55.5 NC_002512.2 + 204978 0.66 0.970663
Target:  5'- ------cGACGCCGcGGGCGaCGGGgaCCg -3'
miRNA:   3'- ucauaauCUGCGGC-CUUGC-GCCCg-GG- -5'
9046 3' -55.5 NC_002512.2 + 117885 0.66 0.970663
Target:  5'- -----cGGACGCCGG-----GGGCCCg -3'
miRNA:   3'- ucauaaUCUGCGGCCuugcgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 224154 0.66 0.967775
Target:  5'- -----cGGACGCgugaggCGGGGCGgGGGCgCg -3'
miRNA:   3'- ucauaaUCUGCG------GCCUUGCgCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 94662 0.66 0.96469
Target:  5'- -----gAGGCGgcCCGGGGCcgGgGGGCCCc -3'
miRNA:   3'- ucauaaUCUGC--GGCCUUG--CgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 185056 0.66 0.96469
Target:  5'- ----cUGGACGCCG--ACcCGGGCCUc -3'
miRNA:   3'- ucauaAUCUGCGGCcuUGcGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 133902 0.66 0.969817
Target:  5'- ------cGGCGCCGGAcgccgaccgccgcuGCGCcaacccGGGCCUc -3'
miRNA:   3'- ucauaauCUGCGGCCU--------------UGCG------CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 209947 0.66 0.973362
Target:  5'- cGUGcugcuCGaCCGG-GCGCGGGUCCu -3'
miRNA:   3'- uCAUaaucuGC-GGCCuUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 89431 0.66 0.96469
Target:  5'- -----cGGGCGUCGGcggggucACGUccGGGCCCa -3'
miRNA:   3'- ucauaaUCUGCGGCCu------UGCG--CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 194892 0.66 0.973362
Target:  5'- ----cUGG-UGCCcuucuccuccgcGGGACGCGaGGCCCa -3'
miRNA:   3'- ucauaAUCuGCGG------------CCUUGCGC-CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 214412 0.66 0.970663
Target:  5'- ---------gGCCGGAGCGCGccgcGCCCg -3'
miRNA:   3'- ucauaaucugCGGCCUUGCGCc---CGGG- -5'
9046 3' -55.5 NC_002512.2 + 223207 0.66 0.96469
Target:  5'- -----gGGACGgcgucCCGGAGCGCGucccGGCCg -3'
miRNA:   3'- ucauaaUCUGC-----GGCCUUGCGC----CCGGg -5'
9046 3' -55.5 NC_002512.2 + 127897 0.66 0.963725
Target:  5'- aGGUAcucGAcCGUCGGAucggccacgagcccGCcgGCGGGCCCg -3'
miRNA:   3'- -UCAUaauCU-GCGGCCU--------------UG--CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 156466 0.66 0.973362
Target:  5'- cGGg---GGACuCgGGGGCgGCGGGCUCg -3'
miRNA:   3'- -UCauaaUCUGcGgCCUUG-CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 205047 0.66 0.970663
Target:  5'- ------cGcCGaCCGGc-CGCGGGCCCg -3'
miRNA:   3'- ucauaauCuGC-GGCCuuGCGCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.