miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 147166 1.12 0.003257
Target:  5'- cAGUAUUAGACGCCGGAACGCGGGCCCg -3'
miRNA:   3'- -UCAUAAUCUGCGGCCUUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 129566 0.82 0.280119
Target:  5'- cAGUcccgAGGCGCCGGGACGUcGGCCCc -3'
miRNA:   3'- -UCAuaa-UCUGCGGCCUUGCGcCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 95796 0.8 0.349772
Target:  5'- ----gUAGGCGCCGGGGCGCGGaUCCg -3'
miRNA:   3'- ucauaAUCUGCGGCCUUGCGCCcGGG- -5'
9046 3' -55.5 NC_002512.2 + 191476 0.78 0.413802
Target:  5'- gAGUAcgAGGCGCCGGAcaGCGCGGcGaCCg -3'
miRNA:   3'- -UCAUaaUCUGCGGCCU--UGCGCC-CgGG- -5'
9046 3' -55.5 NC_002512.2 + 164243 0.78 0.430902
Target:  5'- uGGUGUUcGGCGCCGuGGCGgGGGCCg -3'
miRNA:   3'- -UCAUAAuCUGCGGCcUUGCgCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 6521 0.78 0.430902
Target:  5'- cGUGaUAGACGCCGGAucgGCGGGCg- -3'
miRNA:   3'- uCAUaAUCUGCGGCCUug-CGCCCGgg -5'
9046 3' -55.5 NC_002512.2 + 191309 0.78 0.439606
Target:  5'- -----cGGGgGCCGGGACGCGGGUCg -3'
miRNA:   3'- ucauaaUCUgCGGCCUUGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 24209 0.78 0.448409
Target:  5'- cAGgacgguGACGCCGGAgcuguccgagGCGuCGGGCCCg -3'
miRNA:   3'- -UCauaau-CUGCGGCCU----------UGC-GCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 11444 0.78 0.457309
Target:  5'- -----gGGACGCCGcGGACGgGGGCCg -3'
miRNA:   3'- ucauaaUCUGCGGC-CUUGCgCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 105864 0.77 0.475387
Target:  5'- cGUAcaGGACGCaGGcGCGCGGGUCCg -3'
miRNA:   3'- uCAUaaUCUGCGgCCuUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 99269 0.76 0.550878
Target:  5'- -----aGGACGCCGG-ACGCGGGgUCg -3'
miRNA:   3'- ucauaaUCUGCGGCCuUGCGCCCgGG- -5'
9046 3' -55.5 NC_002512.2 + 2816 0.76 0.5606
Target:  5'- -----gGGAC-CCGGcgcgGGCGCGGGCCCg -3'
miRNA:   3'- ucauaaUCUGcGGCC----UUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 204708 0.75 0.570369
Target:  5'- ------cGACGUCGGcGACgGCGGGCCCg -3'
miRNA:   3'- ucauaauCUGCGGCC-UUG-CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 80701 0.75 0.570369
Target:  5'- ------cGGCGuCCGGGgggcgagggcGCGCGGGCCCg -3'
miRNA:   3'- ucauaauCUGC-GGCCU----------UGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 213793 0.75 0.58018
Target:  5'- ------uGACGCUGGGACGCucGGCCCg -3'
miRNA:   3'- ucauaauCUGCGGCCUUGCGc-CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 111802 0.75 0.590024
Target:  5'- gGGuUGUUGGuCGCCGcGAACgucuGCGGGUCCg -3'
miRNA:   3'- -UC-AUAAUCuGCGGC-CUUG----CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 86281 0.75 0.590024
Target:  5'- -------aACGCCGGAGaCGgGGGCCCg -3'
miRNA:   3'- ucauaaucUGCGGCCUU-GCgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 21467 0.75 0.609795
Target:  5'- ------cGGCGCCGGGA-GCGGcGCCCg -3'
miRNA:   3'- ucauaauCUGCGGCCUUgCGCC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 10546 0.75 0.609795
Target:  5'- -----cGGACGCCGGGcaGCcgGCGGGCCa -3'
miRNA:   3'- ucauaaUCUGCGGCCU--UG--CGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 128854 0.74 0.629627
Target:  5'- -----cGGGCGCC---GCGCGGGCCCu -3'
miRNA:   3'- ucauaaUCUGCGGccuUGCGCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.