miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 41237 0.66 0.709147
Target:  5'- gACGGGCcgccGCCGccgccggcgcccuuGCGGCCCGAGCGc--- -3'
miRNA:   3'- -UGCCUG----CGGC--------------UGUCGGGCUCGCccug -5'
9046 5' -63 NC_002512.2 + 103223 0.66 0.706367
Target:  5'- gGCGGcucgcgucgccgccCGUCGACGGCCgCG-GCGaGGGCa -3'
miRNA:   3'- -UGCCu-------------GCGGCUGUCGG-GCuCGC-CCUG- -5'
9046 5' -63 NC_002512.2 + 220209 0.66 0.702653
Target:  5'- -gGGGC-CCGACggcGGCCCG-G-GGGACg -3'
miRNA:   3'- ugCCUGcGGCUG---UCGGGCuCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 205203 0.66 0.702653
Target:  5'- gACGaGACccccgcCCGAgCGGCCCGGGacggagauCGGGACg -3'
miRNA:   3'- -UGC-CUGc-----GGCU-GUCGGGCUC--------GCCCUG- -5'
9046 5' -63 NC_002512.2 + 114181 0.66 0.702653
Target:  5'- uCGGugGCGCCGGCgucgGGCCCG-GCGGccaugaggaGGCg -3'
miRNA:   3'- uGCC--UGCGGCUG----UCGGGCuCGCC---------CUG- -5'
9046 5' -63 NC_002512.2 + 138025 0.66 0.702653
Target:  5'- uACGGAUccgacuuccgaGCCGACAuCCU--GCGGGACc -3'
miRNA:   3'- -UGCCUG-----------CGGCUGUcGGGcuCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 119985 0.66 0.702653
Target:  5'- cGCGcGACGCCGACgagGGCaaGGacaGGGACa -3'
miRNA:   3'- -UGC-CUGCGGCUG---UCGggCUcg-CCCUG- -5'
9046 5' -63 NC_002512.2 + 45303 0.66 0.702653
Target:  5'- gACGGAcCGCCGcccugcCGGCCC--GCGGGuCg -3'
miRNA:   3'- -UGCCU-GCGGCu-----GUCGGGcuCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 4861 0.66 0.702653
Target:  5'- cGCGGGguuCGCCGcguGCGGCgCCGgcuggaggAGCGGcGACg -3'
miRNA:   3'- -UGCCU---GCGGC---UGUCG-GGC--------UCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 86308 0.66 0.702653
Target:  5'- -aGGGCGCCucccucuccGcCGGCCCGcccGCGGGGa -3'
miRNA:   3'- ugCCUGCGG---------CuGUCGGGCu--CGCCCUg -5'
9046 5' -63 NC_002512.2 + 75195 0.66 0.702653
Target:  5'- --cGACGCCgGACGGCCgcucgGAGCcGGACg -3'
miRNA:   3'- ugcCUGCGG-CUGUCGGg----CUCGcCCUG- -5'
9046 5' -63 NC_002512.2 + 7602 0.66 0.702653
Target:  5'- aGCGGuCGuaGAgGuagcGCCCGAGCaGGGCg -3'
miRNA:   3'- -UGCCuGCggCUgU----CGGGCUCGcCCUG- -5'
9046 5' -63 NC_002512.2 + 124875 0.66 0.702653
Target:  5'- cGCGGG-GCuCGACGcGCCCGuGCGGaACc -3'
miRNA:   3'- -UGCCUgCG-GCUGU-CGGGCuCGCCcUG- -5'
9046 5' -63 NC_002512.2 + 62721 0.66 0.702653
Target:  5'- aGCGcGuCGCgguCGACGGCCUc-GCGGGGCa -3'
miRNA:   3'- -UGC-CuGCG---GCUGUCGGGcuCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 57965 0.66 0.701723
Target:  5'- gGCGGGCGaaGAgGGCgacgaaccuaucaCCGAGUcccgGGGACg -3'
miRNA:   3'- -UGCCUGCggCUgUCG-------------GGCUCG----CCCUG- -5'
9046 5' -63 NC_002512.2 + 39681 0.66 0.697068
Target:  5'- cCGGACGaCCGcgccgccgaccuucuGCAGCCgGGGCGagcGGAUc -3'
miRNA:   3'- uGCCUGC-GGC---------------UGUCGGgCUCGC---CCUG- -5'
9046 5' -63 NC_002512.2 + 108346 0.66 0.693334
Target:  5'- cGCGGcauGCGCgGACGGa-CGGGCGGGu- -3'
miRNA:   3'- -UGCC---UGCGgCUGUCggGCUCGCCCug -5'
9046 5' -63 NC_002512.2 + 2098 0.66 0.693334
Target:  5'- aGCGGGCgguacgGCCG-CGGCUCGGucGCGGG-Cg -3'
miRNA:   3'- -UGCCUG------CGGCuGUCGGGCU--CGCCCuG- -5'
9046 5' -63 NC_002512.2 + 21070 0.66 0.693334
Target:  5'- -aGGGCGCacgggCGGCGGuCCCGcucCGGGGCg -3'
miRNA:   3'- ugCCUGCG-----GCUGUC-GGGCuc-GCCCUG- -5'
9046 5' -63 NC_002512.2 + 153183 0.66 0.693334
Target:  5'- cCGGGCGCUGACGccGCCgacgacaucagaCGAGCGGa-- -3'
miRNA:   3'- uGCCUGCGGCUGU--CGG------------GCUCGCCcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.