miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 149239 0.66 0.727539
Target:  5'- gACGGAcccggcgccgccgcCGCgGACGGCCgGA-CGGGuACg -3'
miRNA:   3'- -UGCCU--------------GCGgCUGUCGGgCUcGCCC-UG- -5'
9046 5' -63 NC_002512.2 + 208772 0.66 0.723881
Target:  5'- aGCGGAagGCCaagguccgcgucugaGACGGCggucgccCCgGAGCGGGACc -3'
miRNA:   3'- -UGCCUg-CGG---------------CUGUCG-------GG-CUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 38277 0.66 0.721131
Target:  5'- cGCGagaaGACGCCGACGGaCUCGAccGCGcGACc -3'
miRNA:   3'- -UGC----CUGCGGCUGUC-GGGCU--CGCcCUG- -5'
9046 5' -63 NC_002512.2 + 133581 0.66 0.721131
Target:  5'- --cGAcCGCCGGgGaCCCGAGCGGGcCg -3'
miRNA:   3'- ugcCU-GCGGCUgUcGGGCUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 22958 0.66 0.721131
Target:  5'- gGCGGugugccaGCCGuucauCA-CCCGcGGCGGGACg -3'
miRNA:   3'- -UGCCug-----CGGCu----GUcGGGC-UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 11444 0.66 0.721131
Target:  5'- -gGGACGCCGcggacgGgGGCCgGGGaaGGGGCg -3'
miRNA:   3'- ugCCUGCGGC------UgUCGGgCUCg-CCCUG- -5'
9046 5' -63 NC_002512.2 + 118090 0.66 0.721131
Target:  5'- cCGG-CGCCGGCGGCgaCCGcGCGG-ACc -3'
miRNA:   3'- uGCCuGCGGCUGUCG--GGCuCGCCcUG- -5'
9046 5' -63 NC_002512.2 + 130506 0.66 0.721131
Target:  5'- cCGGACcCCGACgcuggcggagAGCUCGGgucGCGGGAa -3'
miRNA:   3'- uGCCUGcGGCUG----------UCGGGCU---CGCCCUg -5'
9046 5' -63 NC_002512.2 + 135533 0.66 0.721131
Target:  5'- gAUGGcCGCCaGGC-GCCaCGAGCuGGGCu -3'
miRNA:   3'- -UGCCuGCGG-CUGuCGG-GCUCGcCCUG- -5'
9046 5' -63 NC_002512.2 + 209871 0.66 0.721131
Target:  5'- -gGGACGCCGGCuacuacguGGUCgGucGCGGGGa -3'
miRNA:   3'- ugCCUGCGGCUG--------UCGGgCu-CGCCCUg -5'
9046 5' -63 NC_002512.2 + 101902 0.66 0.718374
Target:  5'- -gGGACGCCGACGGgggcggcguguucuCCau-GCGGGGa -3'
miRNA:   3'- ugCCUGCGGCUGUC--------------GGgcuCGCCCUg -5'
9046 5' -63 NC_002512.2 + 92081 0.66 0.711921
Target:  5'- gACGGACgGCCGccggacgcGCGGCCCgccGAGCGccGACc -3'
miRNA:   3'- -UGCCUG-CGGC--------UGUCGGG---CUCGCc-CUG- -5'
9046 5' -63 NC_002512.2 + 81182 0.66 0.711921
Target:  5'- gAUGG-CGCCGACGaUCCGGGCGaaGGCg -3'
miRNA:   3'- -UGCCuGCGGCUGUcGGGCUCGCc-CUG- -5'
9046 5' -63 NC_002512.2 + 93014 0.66 0.711921
Target:  5'- gGCGGACG--GGCAGCUgugguuccacaCGgaGGCGGGACg -3'
miRNA:   3'- -UGCCUGCggCUGUCGG-----------GC--UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 87857 0.66 0.711921
Target:  5'- gGCGGGuCGCCGGCc-CCCGGccGCGGaagaGACg -3'
miRNA:   3'- -UGCCU-GCGGCUGucGGGCU--CGCC----CUG- -5'
9046 5' -63 NC_002512.2 + 98804 0.66 0.711921
Target:  5'- -aGGuACcCCGGCGGCCgGAGCGacGGAUc -3'
miRNA:   3'- ugCC-UGcGGCUGUCGGgCUCGC--CCUG- -5'
9046 5' -63 NC_002512.2 + 227502 0.66 0.711921
Target:  5'- -gGaGACGCCG-CGaCCCGGGgGGGAg -3'
miRNA:   3'- ugC-CUGCGGCuGUcGGGCUCgCCCUg -5'
9046 5' -63 NC_002512.2 + 219859 0.66 0.711921
Target:  5'- gGCGGAuCGCgGACgggugacgaGGCCgGGGuCGGaGACg -3'
miRNA:   3'- -UGCCU-GCGgCUG---------UCGGgCUC-GCC-CUG- -5'
9046 5' -63 NC_002512.2 + 225500 0.66 0.711921
Target:  5'- uACGGGgcCGCCG-CGGggguCCCGGGCuucgcggacGGGACg -3'
miRNA:   3'- -UGCCU--GCGGCuGUC----GGGCUCG---------CCCUG- -5'
9046 5' -63 NC_002512.2 + 179989 0.66 0.711921
Target:  5'- -gGGACaGCgCG-UGGCCCGugaucccccAGCGGGACu -3'
miRNA:   3'- ugCCUG-CG-GCuGUCGGGC---------UCGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.