miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 6641 0.7 0.497402
Target:  5'- cGCGGACGCCcgaggagucGAaguGCaCCGAGCcggccGGGACg -3'
miRNA:   3'- -UGCCUGCGG---------CUgu-CG-GGCUCG-----CCCUG- -5'
9046 5' -63 NC_002512.2 + 7108 0.69 0.561318
Target:  5'- --cGACGCCGGCAGCuuGguuGGCGaGACa -3'
miRNA:   3'- ugcCUGCGGCUGUCGggC---UCGCcCUG- -5'
9046 5' -63 NC_002512.2 + 7299 0.69 0.561318
Target:  5'- cCGGACagGCCuccuccgcgacGGCGGgCCGcGGCGGGACg -3'
miRNA:   3'- uGCCUG--CGG-----------CUGUCgGGC-UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 7602 0.66 0.702653
Target:  5'- aGCGGuCGuaGAgGuagcGCCCGAGCaGGGCg -3'
miRNA:   3'- -UGCCuGCggCUgU----CGGGCUCGcCCUG- -5'
9046 5' -63 NC_002512.2 + 7698 0.73 0.316346
Target:  5'- aACGGAcgaCGCCGGCcgcGGCCCGGGaguaggcguCGGGAUa -3'
miRNA:   3'- -UGCCU---GCGGCUG---UCGGGCUC---------GCCCUG- -5'
9046 5' -63 NC_002512.2 + 9682 0.7 0.497402
Target:  5'- cCGGGcCGCCGucgGGCCCcGGCGGGGg -3'
miRNA:   3'- uGCCU-GCGGCug-UCGGGcUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 10457 0.71 0.412374
Target:  5'- cGCGGAggaggcCGCCGcCGcCCCGGGCGuGGGCg -3'
miRNA:   3'- -UGCCU------GCGGCuGUcGGGCUCGC-CCUG- -5'
9046 5' -63 NC_002512.2 + 10544 0.77 0.176826
Target:  5'- cGCGGACGCCgGGCAGCC--GGCGGGcCa -3'
miRNA:   3'- -UGCCUGCGG-CUGUCGGgcUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 10954 0.67 0.655691
Target:  5'- -aGGACGCCGGC-GCCCucGGGCcaGGCa -3'
miRNA:   3'- ugCCUGCGGCUGuCGGG--CUCGccCUG- -5'
9046 5' -63 NC_002512.2 + 11334 0.66 0.683972
Target:  5'- gACGGACGCCGGCgggaGGCgaGAGCGc--- -3'
miRNA:   3'- -UGCCUGCGGCUG----UCGggCUCGCccug -5'
9046 5' -63 NC_002512.2 + 11374 0.74 0.296088
Target:  5'- uCGGACGacgagggguCCGACGGCUCGGacgcggacgacccGCGGGACg -3'
miRNA:   3'- uGCCUGC---------GGCUGUCGGGCU-------------CGCCCUG- -5'
9046 5' -63 NC_002512.2 + 11444 0.66 0.721131
Target:  5'- -gGGACGCCGcggacgGgGGCCgGGGaaGGGGCg -3'
miRNA:   3'- ugCCUGCGGC------UgUCGGgCUCg-CCCUG- -5'
9046 5' -63 NC_002512.2 + 11671 0.77 0.185256
Target:  5'- cGCGGccCGCCG-CGGCCCGAGgCGGGGg -3'
miRNA:   3'- -UGCCu-GCGGCuGUCGGGCUC-GCCCUg -5'
9046 5' -63 NC_002512.2 + 13425 0.66 0.730275
Target:  5'- -gGGACGCCGGCuaccugGGCUUcucgauggagaGGGCGGcGGCg -3'
miRNA:   3'- ugCCUGCGGCUG------UCGGG-----------CUCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 13679 0.69 0.561318
Target:  5'- cCGGACGaggCGACGGCCgCG-GCGGuGAUc -3'
miRNA:   3'- uGCCUGCg--GCUGUCGG-GCuCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 13708 0.67 0.655691
Target:  5'- cACGGGCGCgaucccgagacgCGGgAGCCUGAGgGGcgcGACg -3'
miRNA:   3'- -UGCCUGCG------------GCUgUCGGGCUCgCC---CUG- -5'
9046 5' -63 NC_002512.2 + 14118 0.74 0.294816
Target:  5'- aACGGACGgCGcugccgcuggagaaACAGCCCuugggcAGCGGGACg -3'
miRNA:   3'- -UGCCUGCgGC--------------UGUCGGGc-----UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 14339 0.76 0.212698
Target:  5'- -aGGGCGCCGACGGCCagcaGgaucucccggagGGCGGGAUc -3'
miRNA:   3'- ugCCUGCGGCUGUCGGg---C------------UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 14765 0.67 0.673631
Target:  5'- cGCGGACcCCGGCcguucuggcggucGGCCgCG-GCGGcGACg -3'
miRNA:   3'- -UGCCUGcGGCUG-------------UCGG-GCuCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 15176 0.72 0.38096
Target:  5'- gGCGGGCGCUGAguCAGCCUGGGgaaaauaGGGGa -3'
miRNA:   3'- -UGCCUGCGGCU--GUCGGGCUCg------CCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.