miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 155 0.72 0.365864
Target:  5'- -gGGGCGCCGGCGgaggagcgcGCgCCGGGaGGGACg -3'
miRNA:   3'- ugCCUGCGGCUGU---------CG-GGCUCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 2098 0.66 0.693334
Target:  5'- aGCGGGCgguacgGCCG-CGGCUCGGucGCGGG-Cg -3'
miRNA:   3'- -UGCCUG------CGGCuGUCGGGCU--CGCCCuG- -5'
9046 5' -63 NC_002512.2 + 2306 0.67 0.646223
Target:  5'- gGCGGggcucugcuGCGCCGGCGGUCCGgaggccucGGuCGcGGACc -3'
miRNA:   3'- -UGCC---------UGCGGCUGUCGGGC--------UC-GC-CCUG- -5'
9046 5' -63 NC_002512.2 + 2509 0.66 0.730275
Target:  5'- aACGGAucucccccgaCGCCGGCGGCCC---CGGGcCu -3'
miRNA:   3'- -UGCCU----------GCGGCUGUCGGGcucGCCCuG- -5'
9046 5' -63 NC_002512.2 + 2796 0.68 0.617786
Target:  5'- --cGACccgGCCGGCGGCC--GGCGGGACc -3'
miRNA:   3'- ugcCUG---CGGCUGUCGGgcUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 3065 0.72 0.373361
Target:  5'- gGCGGACGCggcggcggCGGCGGCCaCG-GCGGcGGCc -3'
miRNA:   3'- -UGCCUGCG--------GCUGUCGG-GCuCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 4091 0.66 0.683972
Target:  5'- cCGGcCGCCcGCGGCCCGGcCGGcGCa -3'
miRNA:   3'- uGCCuGCGGcUGUCGGGCUcGCCcUG- -5'
9046 5' -63 NC_002512.2 + 4198 0.77 0.189164
Target:  5'- -aGGACGCCGgagaucggugggaGCGGCCgcgggGAGCGGGACg -3'
miRNA:   3'- ugCCUGCGGC-------------UGUCGGg----CUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 4553 0.67 0.674572
Target:  5'- gGCGGcGCGaCCGACGGCUgcGGCgucuGGGGCg -3'
miRNA:   3'- -UGCC-UGC-GGCUGUCGGgcUCG----CCCUG- -5'
9046 5' -63 NC_002512.2 + 4615 0.71 0.420474
Target:  5'- gACGGACGCCGAgGacGCCCuccuGGCGGaGAa -3'
miRNA:   3'- -UGCCUGCGGCUgU--CGGGc---UCGCC-CUg -5'
9046 5' -63 NC_002512.2 + 4658 0.68 0.616839
Target:  5'- aGCGGAggcccCGCCGGCgcgucgaAGCCCaGGaGGGACu -3'
miRNA:   3'- -UGCCU-----GCGGCUG-------UCGGGcUCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 4802 0.67 0.646223
Target:  5'- gACGGuuGCugCGGCAGCUgcuGCGGGACg -3'
miRNA:   3'- -UGCCugCG--GCUGUCGGgcuCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 4861 0.66 0.702653
Target:  5'- cGCGGGguuCGCCGcguGCGGCgCCGgcuggaggAGCGGcGACg -3'
miRNA:   3'- -UGCCU---GCGGC---UGUCG-GGC--------UCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 4910 0.66 0.683972
Target:  5'- -aGGGCGCCGccgccGCcGCCC-AGCGGGuagACg -3'
miRNA:   3'- ugCCUGCGGC-----UGuCGGGcUCGCCC---UG- -5'
9046 5' -63 NC_002512.2 + 4999 0.68 0.580027
Target:  5'- aACGGGuCGaaGGCGGCCgGcgaGGCGGGAa -3'
miRNA:   3'- -UGCCU-GCggCUGUCGGgC---UCGCCCUg -5'
9046 5' -63 NC_002512.2 + 5076 0.7 0.484998
Target:  5'- cGCGGcguuggucgucguCGCCGGCgucGGCgCGGGCGGGAg -3'
miRNA:   3'- -UGCCu------------GCGGCUG---UCGgGCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 5176 0.68 0.608318
Target:  5'- -gGGGCGgCGGcCGGCCCcAGCaGGGCg -3'
miRNA:   3'- ugCCUGCgGCU-GUCGGGcUCGcCCUG- -5'
9046 5' -63 NC_002512.2 + 5211 0.71 0.42867
Target:  5'- cGCGGGCcaGCCGACGGC---GGCGGGAa -3'
miRNA:   3'- -UGCCUG--CGGCUGUCGggcUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 5875 0.67 0.627264
Target:  5'- cCGGGCGucguCCGACucgucGCUCGuggacGGCGGGGCg -3'
miRNA:   3'- uGCCUGC----GGCUGu----CGGGC-----UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 6319 0.7 0.462365
Target:  5'- -aGGugGCCG-CcGCCCGcGGgGGGACc -3'
miRNA:   3'- ugCCugCGGCuGuCGGGC-UCgCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.