miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 11374 0.74 0.296088
Target:  5'- uCGGACGacgagggguCCGACGGCUCGGacgcggacgacccGCGGGACg -3'
miRNA:   3'- uGCCUGC---------GGCUGUCGGGCU-------------CGCCCUG- -5'
9046 5' -63 NC_002512.2 + 14339 0.76 0.212698
Target:  5'- -aGGGCGCCGACGGCCagcaGgaucucccggagGGCGGGAUc -3'
miRNA:   3'- ugCCUGCGGCUGUCGGg---C------------UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 116970 0.76 0.222595
Target:  5'- cCGGGcCGCCGACGccccGUCCGGGCGGGcCg -3'
miRNA:   3'- uGCCU-GCGGCUGU----CGGGCUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 226521 0.75 0.249056
Target:  5'- cGCGGAgcggGCgGACGGUCUGAGCGGGGg -3'
miRNA:   3'- -UGCCUg---CGgCUGUCGGGCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 86657 0.75 0.25465
Target:  5'- cGCGGugGCCgcguccgagcgGACGGCgCgCGAGgGGGACg -3'
miRNA:   3'- -UGCCugCGG-----------CUGUCG-G-GCUCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 97194 0.74 0.278063
Target:  5'- cAC-GACGCCcgucugcggcGGCGGgCCGGGCGGGACg -3'
miRNA:   3'- -UGcCUGCGG----------CUGUCgGGCUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 88443 0.74 0.284178
Target:  5'- aACGGACGUCGGa---CCGAGCGGGGg -3'
miRNA:   3'- -UGCCUGCGGCUgucgGGCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 137968 0.74 0.290398
Target:  5'- cGCGGAuguccugcgUGCCG--GGCCCGAGCGGGcCg -3'
miRNA:   3'- -UGCCU---------GCGGCugUCGGGCUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 14118 0.74 0.294816
Target:  5'- aACGGACGgCGcugccgcuggagaaACAGCCCuugggcAGCGGGACg -3'
miRNA:   3'- -UGCCUGCgGC--------------UGUCGGGc-----UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 29564 0.77 0.198564
Target:  5'- -aGGACGCCGGCGGgaagccgcucCCCGAGgGcGGACg -3'
miRNA:   3'- ugCCUGCGGCUGUC----------GGGCUCgC-CCUG- -5'
9046 5' -63 NC_002512.2 + 45250 0.77 0.194038
Target:  5'- cGCGGAcuCGCCGuCGGCCgCcGGCGGGGCg -3'
miRNA:   3'- -UGCCU--GCGGCuGUCGG-GcUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 4198 0.77 0.189164
Target:  5'- -aGGACGCCGgagaucggugggaGCGGCCgcgggGAGCGGGACg -3'
miRNA:   3'- ugCCUGCGGC-------------UGUCGGg----CUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 101605 0.8 0.112413
Target:  5'- uGCGGGCgGCCGuCGGCCCGGcGCcGGGACg -3'
miRNA:   3'- -UGCCUG-CGGCuGUCGGGCU-CG-CCCUG- -5'
9046 5' -63 NC_002512.2 + 118485 0.8 0.112413
Target:  5'- uACGG-CGCCGAgCuGCCgGGGCGGGACg -3'
miRNA:   3'- -UGCCuGCGGCU-GuCGGgCUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 40357 0.79 0.132775
Target:  5'- cGCGGACGCCGACcgcggcgAGCCCGGGCccGGAg -3'
miRNA:   3'- -UGCCUGCGGCUG-------UCGGGCUCGc-CCUg -5'
9046 5' -63 NC_002512.2 + 79747 0.79 0.149956
Target:  5'- gGCGGACGCCGACA---CGAGCGGGGu -3'
miRNA:   3'- -UGCCUGCGGCUGUcggGCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 104877 0.78 0.15723
Target:  5'- gGCGG-CGCCGACGGCgCGA-CGGGGCc -3'
miRNA:   3'- -UGCCuGCGGCUGUCGgGCUcGCCCUG- -5'
9046 5' -63 NC_002512.2 + 136203 0.78 0.164822
Target:  5'- cGCGucGACGCCGGCGGCCUGGugcGCGGGGg -3'
miRNA:   3'- -UGC--CUGCGGCUGUCGGGCU---CGCCCUg -5'
9046 5' -63 NC_002512.2 + 10544 0.77 0.176826
Target:  5'- cGCGGACGCCgGGCAGCC--GGCGGGcCa -3'
miRNA:   3'- -UGCCUGCGG-CUGUCGGgcUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 11671 0.77 0.185256
Target:  5'- cGCGGccCGCCG-CGGCCCGAGgCGGGGg -3'
miRNA:   3'- -UGCCu-GCGGCuGUCGGGCUC-GCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.