miRNA display CGI


Results 1 - 20 of 394 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 217922 0.66 0.739346
Target:  5'- gACGGugGCCcGCgucuucguggGGaCCgGGGCGGGGa -3'
miRNA:   3'- -UGCCugCGGcUG----------UC-GGgCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 92081 0.66 0.711921
Target:  5'- gACGGACgGCCGccggacgcGCGGCCCgccGAGCGccGACc -3'
miRNA:   3'- -UGCCUG-CGGC--------UGUCGGG---CUCGCc-CUG- -5'
9046 5' -63 NC_002512.2 + 227502 0.66 0.711921
Target:  5'- -gGaGACGCCG-CGaCCCGGGgGGGAg -3'
miRNA:   3'- ugC-CUGCGGCuGUcGGGCUCgCCCUg -5'
9046 5' -63 NC_002512.2 + 147201 1.07 0.001569
Target:  5'- cACGGACGCCGACAGCCCGAGCGGGACc -3'
miRNA:   3'- -UGCCUGCGGCUGUCGGGCUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 111266 0.66 0.736633
Target:  5'- cGCGGACgagcuugauGUCGACGucccgcggccagacGCCCGGGgucUGGGACc -3'
miRNA:   3'- -UGCCUG---------CGGCUGU--------------CGGGCUC---GCCCUG- -5'
9046 5' -63 NC_002512.2 + 218655 0.66 0.730275
Target:  5'- gGCGGACGgaGGCGGauaCCCGGGCacaccGGGCc -3'
miRNA:   3'- -UGCCUGCggCUGUC---GGGCUCGc----CCUG- -5'
9046 5' -63 NC_002512.2 + 101071 0.66 0.730275
Target:  5'- cCGG-CGUCGAgGGCCCGccCGcGGACc -3'
miRNA:   3'- uGCCuGCGGCUgUCGGGCucGC-CCUG- -5'
9046 5' -63 NC_002512.2 + 96203 0.66 0.730275
Target:  5'- gGCGGcCGCgaggucggccaCGGCGGCCgCG-GCGGcGGCg -3'
miRNA:   3'- -UGCCuGCG-----------GCUGUCGG-GCuCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 90402 0.66 0.730275
Target:  5'- uGCcGGCGCCGGCcguGCCCGugaucaggaaGGCGGaGAa -3'
miRNA:   3'- -UGcCUGCGGCUGu--CGGGC----------UCGCC-CUg -5'
9046 5' -63 NC_002512.2 + 101902 0.66 0.718374
Target:  5'- -gGGACGCCGACGGgggcggcguguucuCCau-GCGGGGa -3'
miRNA:   3'- ugCCUGCGGCUGUC--------------GGgcuCGCCCUg -5'
9046 5' -63 NC_002512.2 + 208772 0.66 0.723881
Target:  5'- aGCGGAagGCCaagguccgcgucugaGACGGCggucgccCCgGAGCGGGACc -3'
miRNA:   3'- -UGCCUg-CGG---------------CUGUCG-------GG-CUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 99258 0.66 0.730275
Target:  5'- -gGGACGCCccgagGAC-GCCgGAcGCGGGGu -3'
miRNA:   3'- ugCCUGCGG-----CUGuCGGgCU-CGCCCUg -5'
9046 5' -63 NC_002512.2 + 223686 0.66 0.739346
Target:  5'- -aGGGCGCCGACAacggcaucGUCCuGGcCGGcGACu -3'
miRNA:   3'- ugCCUGCGGCUGU--------CGGGcUC-GCC-CUG- -5'
9046 5' -63 NC_002512.2 + 209871 0.66 0.721131
Target:  5'- -gGGACGCCGGCuacuacguGGUCgGucGCGGGGa -3'
miRNA:   3'- ugCCUGCGGCUG--------UCGGgCu-CGCCCUg -5'
9046 5' -63 NC_002512.2 + 227673 0.66 0.738442
Target:  5'- aGCGGcgGCGCCGcCGGCgaCCGAgacgacgacggcgGCGGGGg -3'
miRNA:   3'- -UGCC--UGCGGCuGUCG--GGCU-------------CGCCCUg -5'
9046 5' -63 NC_002512.2 + 201835 0.66 0.730275
Target:  5'- -gGGGCuccuuccgcgGCCGGCAGCUCGccUGGGGCc -3'
miRNA:   3'- ugCCUG----------CGGCUGUCGGGCucGCCCUG- -5'
9046 5' -63 NC_002512.2 + 130506 0.66 0.721131
Target:  5'- cCGGACcCCGACgcuggcggagAGCUCGGgucGCGGGAa -3'
miRNA:   3'- uGCCUGcGGCUG----------UCGGGCU---CGCCCUg -5'
9046 5' -63 NC_002512.2 + 87857 0.66 0.711921
Target:  5'- gGCGGGuCGCCGGCc-CCCGGccGCGGaagaGACg -3'
miRNA:   3'- -UGCCU-GCGGCUGucGGGCU--CGCC----CUG- -5'
9046 5' -63 NC_002512.2 + 143535 0.66 0.738442
Target:  5'- gGCGGccucgucgcCGUCGGCGGCCgcgcgucuccccgCGGGCGGGcCg -3'
miRNA:   3'- -UGCCu--------GCGGCUGUCGG-------------GCUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 157079 0.66 0.730275
Target:  5'- cCGGGguCGCCGGC-GCCCacGGCGGGcCc -3'
miRNA:   3'- uGCCU--GCGGCUGuCGGGc-UCGCCCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.