miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 57965 0.66 0.701723
Target:  5'- gGCGGGCGaaGAgGGCgacgaaccuaucaCCGAGUcccgGGGACg -3'
miRNA:   3'- -UGCCUGCggCUgUCG-------------GGCUCG----CCCUG- -5'
9046 5' -63 NC_002512.2 + 62721 0.66 0.702653
Target:  5'- aGCGcGuCGCgguCGACGGCCUc-GCGGGGCa -3'
miRNA:   3'- -UGC-CuGCG---GCUGUCGGGcuCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 108346 0.66 0.693334
Target:  5'- cGCGGcauGCGCgGACGGa-CGGGCGGGu- -3'
miRNA:   3'- -UGCC---UGCGgCUGUCggGCUCGCCCug -5'
9046 5' -63 NC_002512.2 + 2098 0.66 0.693334
Target:  5'- aGCGGGCgguacgGCCG-CGGCUCGGucGCGGG-Cg -3'
miRNA:   3'- -UGCCUG------CGGCuGUCGGGCU--CGCCCuG- -5'
9046 5' -63 NC_002512.2 + 4861 0.66 0.702653
Target:  5'- cGCGGGguuCGCCGcguGCGGCgCCGgcuggaggAGCGGcGACg -3'
miRNA:   3'- -UGCCU---GCGGC---UGUCG-GGC--------UCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 18436 0.66 0.683972
Target:  5'- -gGGGCaGCCG-CAggcGCCCGAGCuccGGGCa -3'
miRNA:   3'- ugCCUG-CGGCuGU---CGGGCUCGc--CCUG- -5'
9046 5' -63 NC_002512.2 + 22407 0.66 0.683972
Target:  5'- gACGGGCGCCGAga---CGAGCGacucGGACg -3'
miRNA:   3'- -UGCCUGCGGCUgucggGCUCGC----CCUG- -5'
9046 5' -63 NC_002512.2 + 187982 0.66 0.683033
Target:  5'- gACGcauaauCGCCGAUgcaucgagacuguGGCCgGAGCGGGGa -3'
miRNA:   3'- -UGCcu----GCGGCUG-------------UCGGgCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 39681 0.66 0.697068
Target:  5'- cCGGACGaCCGcgccgccgaccuucuGCAGCCgGGGCGagcGGAUc -3'
miRNA:   3'- uGCCUGC-GGC---------------UGUCGGgCUCGC---CCUG- -5'
9046 5' -63 NC_002512.2 + 21070 0.66 0.693334
Target:  5'- -aGGGCGCacgggCGGCGGuCCCGcucCGGGGCg -3'
miRNA:   3'- ugCCUGCG-----GCUGUC-GGGCuc-GCCCUG- -5'
9046 5' -63 NC_002512.2 + 79182 0.66 0.683033
Target:  5'- uCGGcCGCCGAgagccaaCGGUCCGucGGCGGcGACc -3'
miRNA:   3'- uGCCuGCGGCU-------GUCGGGC--UCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 4091 0.66 0.683972
Target:  5'- cCGGcCGCCcGCGGCCCGGcCGGcGCa -3'
miRNA:   3'- uGCCuGCGGcUGUCGGGCUcGCCcUG- -5'
9046 5' -63 NC_002512.2 + 11334 0.66 0.683972
Target:  5'- gACGGACGCCGGCgggaGGCgaGAGCGc--- -3'
miRNA:   3'- -UGCCUGCGGCUG----UCGggCUCGCccug -5'
9046 5' -63 NC_002512.2 + 122793 0.66 0.683972
Target:  5'- -aGGGCGCCG--GGCCCuggcGGCGGGuCc -3'
miRNA:   3'- ugCCUGCGGCugUCGGGc---UCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 86308 0.66 0.702653
Target:  5'- -aGGGCGCCucccucuccGcCGGCCCGcccGCGGGGa -3'
miRNA:   3'- ugCCUGCGG---------CuGUCGGGCu--CGCCCUg -5'
9046 5' -63 NC_002512.2 + 4910 0.66 0.683972
Target:  5'- -aGGGCGCCGccgccGCcGCCC-AGCGGGuagACg -3'
miRNA:   3'- ugCCUGCGGC-----UGuCGGGcUCGCCC---UG- -5'
9046 5' -63 NC_002512.2 + 45303 0.66 0.702653
Target:  5'- gACGGAcCGCCGcccugcCGGCCC--GCGGGuCg -3'
miRNA:   3'- -UGCCU-GCGGCu-----GUCGGGcuCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 46398 0.66 0.693334
Target:  5'- cGCGGcCGuaGGCGGCCCGcagcacggccuuGGUGGcGGCg -3'
miRNA:   3'- -UGCCuGCggCUGUCGGGC------------UCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 68919 0.66 0.683972
Target:  5'- cUGGcCGCCG-CGGCCuCGGG-GGGAUc -3'
miRNA:   3'- uGCCuGCGGCuGUCGG-GCUCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 153183 0.66 0.693334
Target:  5'- cCGGGCGCUGACGccGCCgacgacaucagaCGAGCGGa-- -3'
miRNA:   3'- uGCCUGCGGCUGU--CGG------------GCUCGCCcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.