miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 18436 0.66 0.683972
Target:  5'- -gGGGCaGCCG-CAggcGCCCGAGCuccGGGCa -3'
miRNA:   3'- ugCCUG-CGGCuGU---CGGGCUCGc--CCUG- -5'
9046 5' -63 NC_002512.2 + 2098 0.66 0.693334
Target:  5'- aGCGGGCgguacgGCCG-CGGCUCGGucGCGGG-Cg -3'
miRNA:   3'- -UGCCUG------CGGCuGUCGGGCU--CGCCCuG- -5'
9046 5' -63 NC_002512.2 + 81930 0.66 0.739346
Target:  5'- -gGGACGaCGACGGCgaGGGCGGaGGg -3'
miRNA:   3'- ugCCUGCgGCUGUCGggCUCGCC-CUg -5'
9046 5' -63 NC_002512.2 + 103223 0.66 0.706367
Target:  5'- gGCGGcucgcgucgccgccCGUCGACGGCCgCG-GCGaGGGCa -3'
miRNA:   3'- -UGCCu-------------GCGGCUGUCGG-GCuCGC-CCUG- -5'
9046 5' -63 NC_002512.2 + 11334 0.66 0.683972
Target:  5'- gACGGACGCCGGCgggaGGCgaGAGCGc--- -3'
miRNA:   3'- -UGCCUGCGGCUG----UCGggCUCGCccug -5'
9046 5' -63 NC_002512.2 + 133581 0.66 0.721131
Target:  5'- --cGAcCGCCGGgGaCCCGAGCGGGcCg -3'
miRNA:   3'- ugcCU-GCGGCUgUcGGGCUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 21070 0.66 0.693334
Target:  5'- -aGGGCGCacgggCGGCGGuCCCGcucCGGGGCg -3'
miRNA:   3'- ugCCUGCG-----GCUGUC-GGGCuc-GCCCUG- -5'
9046 5' -63 NC_002512.2 + 187982 0.66 0.683033
Target:  5'- gACGcauaauCGCCGAUgcaucgagacuguGGCCgGAGCGGGGa -3'
miRNA:   3'- -UGCcu----GCGGCUG-------------UCGGgCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 46398 0.66 0.693334
Target:  5'- cGCGGcCGuaGGCGGCCCGcagcacggccuuGGUGGcGGCg -3'
miRNA:   3'- -UGCCuGCggCUGUCGGGC------------UCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 22407 0.66 0.683972
Target:  5'- gACGGGCGCCGAga---CGAGCGacucGGACg -3'
miRNA:   3'- -UGCCUGCGGCUgucggGCUCGC----CCUG- -5'
9046 5' -63 NC_002512.2 + 127537 0.66 0.731185
Target:  5'- cCGGACGaCCGAC-GCCCGGacccggcucgucgucCGGGAg -3'
miRNA:   3'- uGCCUGC-GGCUGuCGGGCUc--------------GCCCUg -5'
9046 5' -63 NC_002512.2 + 45303 0.66 0.702653
Target:  5'- gACGGAcCGCCGcccugcCGGCCC--GCGGGuCg -3'
miRNA:   3'- -UGCCU-GCGGCu-----GUCGGGcuCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 75434 0.66 0.730275
Target:  5'- -gGGACGuCCGGa--UCgGGGCGGGACg -3'
miRNA:   3'- ugCCUGC-GGCUgucGGgCUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 75195 0.66 0.702653
Target:  5'- --cGACGCCgGACGGCCgcucgGAGCcGGACg -3'
miRNA:   3'- ugcCUGCGG-CUGUCGGg----CUCGcCCUG- -5'
9046 5' -63 NC_002512.2 + 4091 0.66 0.683972
Target:  5'- cCGGcCGCCcGCGGCCCGGcCGGcGCa -3'
miRNA:   3'- uGCCuGCGGcUGUCGGGCUcGCCcUG- -5'
9046 5' -63 NC_002512.2 + 153183 0.66 0.693334
Target:  5'- cCGGGCGCUGACGccGCCgacgacaucagaCGAGCGGa-- -3'
miRNA:   3'- uGCCUGCGGCUGU--CGG------------GCUCGCCcug -5'
9046 5' -63 NC_002512.2 + 11444 0.66 0.721131
Target:  5'- -gGGACGCCGcggacgGgGGCCgGGGaaGGGGCg -3'
miRNA:   3'- ugCCUGCGGC------UgUCGGgCUCg-CCCUG- -5'
9046 5' -63 NC_002512.2 + 86308 0.66 0.702653
Target:  5'- -aGGGCGCCucccucuccGcCGGCCCGcccGCGGGGa -3'
miRNA:   3'- ugCCUGCGG---------CuGUCGGGCu--CGCCCUg -5'
9046 5' -63 NC_002512.2 + 135533 0.66 0.721131
Target:  5'- gAUGGcCGCCaGGC-GCCaCGAGCuGGGCu -3'
miRNA:   3'- -UGCCuGCGG-CUGuCGG-GCUCGcCCUG- -5'
9046 5' -63 NC_002512.2 + 131033 0.66 0.730275
Target:  5'- -aGGGCGUCGG-GGCCgCGGGgGaGGACg -3'
miRNA:   3'- ugCCUGCGGCUgUCGG-GCUCgC-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.