miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 125106 0.76 0.232881
Target:  5'- cGCGGAcccCGCCGACGcgccGUCCGAcCGGGACg -3'
miRNA:   3'- -UGCCU---GCGGCUGU----CGGGCUcGCCCUG- -5'
9046 5' -63 NC_002512.2 + 146700 0.76 0.232881
Target:  5'- cGCGGACGgCGACGGagaCGAcgGCGGGGCg -3'
miRNA:   3'- -UGCCUGCgGCUGUCgg-GCU--CGCCCUG- -5'
9046 5' -63 NC_002512.2 + 226521 0.75 0.249056
Target:  5'- cGCGGAgcggGCgGACGGUCUGAGCGGGGg -3'
miRNA:   3'- -UGCCUg---CGgCUGUCGGGCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 112922 0.75 0.25465
Target:  5'- -gGGGCGUCGGCGGCCCG-GUGGcGCg -3'
miRNA:   3'- ugCCUGCGGCUGUCGGGCuCGCCcUG- -5'
9046 5' -63 NC_002512.2 + 196502 0.75 0.25465
Target:  5'- gGCGGACGCCG--GGUUCGAcCGGGACa -3'
miRNA:   3'- -UGCCUGCGGCugUCGGGCUcGCCCUG- -5'
9046 5' -63 NC_002512.2 + 183492 0.75 0.25465
Target:  5'- uGCGGGcCGCCuACGGCCgCGAGgGGGAg -3'
miRNA:   3'- -UGCCU-GCGGcUGUCGG-GCUCgCCCUg -5'
9046 5' -63 NC_002512.2 + 86657 0.75 0.25465
Target:  5'- cGCGGugGCCgcguccgagcgGACGGCgCgCGAGgGGGACg -3'
miRNA:   3'- -UGCCugCGG-----------CUGUCG-G-GCUCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 185056 0.75 0.266148
Target:  5'- cUGGACGCCGACccgGGCCuCGAcCGGGAg -3'
miRNA:   3'- uGCCUGCGGCUG---UCGG-GCUcGCCCUg -5'
9046 5' -63 NC_002512.2 + 202201 0.75 0.266148
Target:  5'- cCGGAuCGCCGACGGaCCC--GCGGGAUa -3'
miRNA:   3'- uGCCU-GCGGCUGUC-GGGcuCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 204700 0.74 0.272053
Target:  5'- gGCGGACGCgacgucggcgaCGGCgGGCCCGGGgCGGGGg -3'
miRNA:   3'- -UGCCUGCG-----------GCUG-UCGGGCUC-GCCCUg -5'
9046 5' -63 NC_002512.2 + 222636 0.74 0.272053
Target:  5'- gACGGACGCCgcuccgccgcGACGGCcggCCGGGCcgaGGGGCg -3'
miRNA:   3'- -UGCCUGCGG----------CUGUCG---GGCUCG---CCCUG- -5'
9046 5' -63 NC_002512.2 + 97194 0.74 0.278063
Target:  5'- cAC-GACGCCcgucugcggcGGCGGgCCGGGCGGGACg -3'
miRNA:   3'- -UGcCUGCGG----------CUGUCgGGCUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 88443 0.74 0.284178
Target:  5'- aACGGACGUCGGa---CCGAGCGGGGg -3'
miRNA:   3'- -UGCCUGCGGCUgucgGGCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 137968 0.74 0.290398
Target:  5'- cGCGGAuguccugcgUGCCG--GGCCCGAGCGGGcCg -3'
miRNA:   3'- -UGCCU---------GCGGCugUCGGGCUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 14118 0.74 0.294816
Target:  5'- aACGGACGgCGcugccgcuggagaaACAGCCCuugggcAGCGGGACg -3'
miRNA:   3'- -UGCCUGCgGC--------------UGUCGGGc-----UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 11374 0.74 0.296088
Target:  5'- uCGGACGacgagggguCCGACGGCUCGGacgcggacgacccGCGGGACg -3'
miRNA:   3'- uGCCUGC---------GGCUGUCGGGCU-------------CGCCCUG- -5'
9046 5' -63 NC_002512.2 + 45413 0.74 0.296725
Target:  5'- uGCGGGCGCuCGACGGCggcgCCGGccGCGGcGACu -3'
miRNA:   3'- -UGCCUGCG-GCUGUCG----GGCU--CGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 160748 0.74 0.296725
Target:  5'- aACGG-CGCCGGCcccgggcacggaGGuCCCgGAGCGGGGCc -3'
miRNA:   3'- -UGCCuGCGGCUG------------UC-GGG-CUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 101695 0.74 0.303159
Target:  5'- cCGGuccCGCCGGCGGCCCGcuCGGcGACc -3'
miRNA:   3'- uGCCu--GCGGCUGUCGGGCucGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 42574 0.74 0.303159
Target:  5'- gGCGGGCGCCGcgaGGCgaGcGGCGGGGCg -3'
miRNA:   3'- -UGCCUGCGGCug-UCGggC-UCGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.