miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 229558 0.72 0.365864
Target:  5'- -gGGGCGCCGGCGgaggagcgcGCgCCGGGaGGGACg -3'
miRNA:   3'- ugCCUGCGGCUGU---------CG-GGCUCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 228450 0.72 0.388663
Target:  5'- aGCGGACGCgCGuauAUAGaCgCCGAGgGGGACc -3'
miRNA:   3'- -UGCCUGCG-GC---UGUC-G-GGCUCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 228255 0.68 0.617786
Target:  5'- cCGGACGCgGgggcgacugaccGCGGaCCGGGUGGGAg -3'
miRNA:   3'- uGCCUGCGgC------------UGUCgGGCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 228134 0.71 0.427846
Target:  5'- cUGGGCGCCGACgggcgcgagcucaGGUCCacgcggagccgGAGCGGGAg -3'
miRNA:   3'- uGCCUGCGGCUG-------------UCGGG-----------CUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 228047 0.7 0.497402
Target:  5'- gGCGaGACGCCcgcgGACGGCUgCGGcGCGGGAg -3'
miRNA:   3'- -UGC-CUGCGG----CUGUCGG-GCU-CGCCCUg -5'
9046 5' -63 NC_002512.2 + 227979 0.68 0.569719
Target:  5'- -aGGGCcccggcgccgaggGCCGAgGGCCgGAGCcGGACg -3'
miRNA:   3'- ugCCUG-------------CGGCUgUCGGgCUCGcCCUG- -5'
9046 5' -63 NC_002512.2 + 227934 0.67 0.674572
Target:  5'- --cGACGCCGGCGGa-CGAGgCGGGGg -3'
miRNA:   3'- ugcCUGCGGCUGUCggGCUC-GCCCUg -5'
9046 5' -63 NC_002512.2 + 227673 0.66 0.738442
Target:  5'- aGCGGcgGCGCCGcCGGCgaCCGAgacgacgacggcgGCGGGGg -3'
miRNA:   3'- -UGCC--UGCGGCuGUCG--GGCU-------------CGCCCUg -5'
9046 5' -63 NC_002512.2 + 227502 0.66 0.711921
Target:  5'- -gGaGACGCCG-CGaCCCGGGgGGGAg -3'
miRNA:   3'- ugC-CUGCGGCuGUcGGGCUCgCCCUg -5'
9046 5' -63 NC_002512.2 + 227313 0.72 0.387888
Target:  5'- cAUGGgggagacGCGCCGGC-GCCCGAGgaagGGGACg -3'
miRNA:   3'- -UGCC-------UGCGGCUGuCGGGCUCg---CCCUG- -5'
9046 5' -63 NC_002512.2 + 227051 0.7 0.506349
Target:  5'- aACGGGCG--GACGGCCgGAGCcguGGGAUa -3'
miRNA:   3'- -UGCCUGCggCUGUCGGgCUCG---CCCUG- -5'
9046 5' -63 NC_002512.2 + 226730 0.69 0.561318
Target:  5'- cGCGGGCGaCGACGGCgggaCCGGGCuccggccGGACg -3'
miRNA:   3'- -UGCCUGCgGCUGUCG----GGCUCGc------CCUG- -5'
9046 5' -63 NC_002512.2 + 226521 0.75 0.249056
Target:  5'- cGCGGAgcggGCgGACGGUCUGAGCGGGGg -3'
miRNA:   3'- -UGCCUg---CGgCUGUCGGGCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 225788 0.66 0.6924
Target:  5'- -aGGcuGCGCCGGCcgGGCCgCGGGCggccggguggccuGGGACc -3'
miRNA:   3'- ugCC--UGCGGCUG--UCGG-GCUCG-------------CCCUG- -5'
9046 5' -63 NC_002512.2 + 225500 0.66 0.711921
Target:  5'- uACGGGgcCGCCG-CGGggguCCCGGGCuucgcggacGGGACg -3'
miRNA:   3'- -UGCCU--GCGGCuGUC----GGGCUCG---------CCCUG- -5'
9046 5' -63 NC_002512.2 + 224800 0.7 0.497402
Target:  5'- cGCGccGACGCCGGCGacgacgaccaacGCCgCGGGCGGG-Cu -3'
miRNA:   3'- -UGC--CUGCGGCUGU------------CGG-GCUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 224343 0.7 0.471006
Target:  5'- cGCGGcgccGCGCCGG-GGUCgCGGGCGGGAg -3'
miRNA:   3'- -UGCC----UGCGGCUgUCGG-GCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 224152 0.71 0.420474
Target:  5'- gGCGGACG-CGugAGgCgGGGCGGGGg -3'
miRNA:   3'- -UGCCUGCgGCugUCgGgCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 224096 0.67 0.636745
Target:  5'- gGCGGuuuuguaacaaACGCCGAaccGUCUGAGCggacGGGACa -3'
miRNA:   3'- -UGCC-----------UGCGGCUgu-CGGGCUCG----CCCUG- -5'
9046 5' -63 NC_002512.2 + 223800 0.72 0.38096
Target:  5'- -gGGACGUCGGCGGCgaCCGc-CGGGACg -3'
miRNA:   3'- ugCCUGCGGCUGUCG--GGCucGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.