Results 21 - 40 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9047 | 3' | -58.4 | NC_002512.2 | + | 126990 | 0.66 | 0.868464 |
Target: 5'- -uCCUCuCCCAgCGCGGGucguacccggguCCCCCGu -3' miRNA: 3'- uuGGAGuGGGUgGUGCCUuu----------GGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 90063 | 0.66 | 0.878308 |
Target: 5'- --aCUCGCCCAcguCCuuGGAcacccgaccgaGGCCCCCGc -3' miRNA: 3'- uugGAGUGGGU---GGugCCU-----------UUGGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 139553 | 0.66 | 0.891024 |
Target: 5'- -uCCUCGCCaacgucucaACCugGGAcagcgcuAACCUCCGu -3' miRNA: 3'- uuGGAGUGGg--------UGGugCCU-------UUGGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 99390 | 0.66 | 0.891672 |
Target: 5'- cGGCCUCgcaGCCCggcuGCgACGGAucgGGCCCCg- -3' miRNA: 3'- -UUGGAG---UGGG----UGgUGCCU---UUGGGGgu -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 120410 | 0.66 | 0.871317 |
Target: 5'- uACCUCACCCugcucacccggACCGaagaGGAggUCCCg- -3' miRNA: 3'- uUGGAGUGGG-----------UGGUg---CCUuuGGGGgu -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 126671 | 0.66 | 0.864126 |
Target: 5'- cGGCgaCGCgagCCGCCuCGGAuACCCCCGc -3' miRNA: 3'- -UUGgaGUG---GGUGGuGCCUuUGGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 138254 | 0.66 | 0.885095 |
Target: 5'- cGCCgaACCCGCU--GGAGAUCCCCGc -3' miRNA: 3'- uUGGagUGGGUGGugCCUUUGGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 214980 | 0.66 | 0.885095 |
Target: 5'- aGACCgaCGCCgACCuCGGGAugCCCg- -3' miRNA: 3'- -UUGGa-GUGGgUGGuGCCUUugGGGgu -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 74507 | 0.66 | 0.885095 |
Target: 5'- gGACCUCGCCaGCCucGCGGu--CCCgCCu -3' miRNA: 3'- -UUGGAGUGGgUGG--UGCCuuuGGG-GGu -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 76822 | 0.66 | 0.891024 |
Target: 5'- cGCCUCGaCCGCCGacccgacCGGGAccGCUCCCGc -3' miRNA: 3'- uUGGAGUgGGUGGU-------GCCUU--UGGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 195342 | 0.66 | 0.878308 |
Target: 5'- uGCgUgACCCGgCGcCGGGAACCCCgGg -3' miRNA: 3'- uUGgAgUGGGUgGU-GCCUUUGGGGgU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 154818 | 0.66 | 0.864126 |
Target: 5'- cGCCUCGacgucgCCGCC-CGGucuCCCCCGc -3' miRNA: 3'- uUGGAGUg-----GGUGGuGCCuuuGGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 147916 | 0.66 | 0.869181 |
Target: 5'- cGCCgccacCACCCGCC-CGGGgcucaccgcgcgccGGCCCCUc -3' miRNA: 3'- uUGGa----GUGGGUGGuGCCU--------------UUGGGGGu -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 77083 | 0.66 | 0.871317 |
Target: 5'- cGCC-CGCCguCGCCGCGGA--CCUCCGa -3' miRNA: 3'- uUGGaGUGG--GUGGUGCCUuuGGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 91640 | 0.66 | 0.885095 |
Target: 5'- uGCUgaaCACCCACC-CGGugaaggugguGACCUCCAg -3' miRNA: 3'- uUGGa--GUGGGUGGuGCCu---------UUGGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 77135 | 0.66 | 0.878308 |
Target: 5'- aGACCUCGCCguCgGgGGAccuuccgaccGCCCCCGa -3' miRNA: 3'- -UUGGAGUGGguGgUgCCUu---------UGGGGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 126794 | 0.66 | 0.878308 |
Target: 5'- uGCCgCGCCCGuCCcCGGGAucGCCuCCCGu -3' miRNA: 3'- uUGGaGUGGGU-GGuGCCUU--UGG-GGGU- -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 197463 | 0.66 | 0.871317 |
Target: 5'- -cCCUCGCCCGCUucgucagcuuCGGGGAgCCCa- -3' miRNA: 3'- uuGGAGUGGGUGGu---------GCCUUUgGGGgu -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 121496 | 0.66 | 0.864126 |
Target: 5'- -cCCcCACCCACCG-GGcucGCCCCCc -3' miRNA: 3'- uuGGaGUGGGUGGUgCCuu-UGGGGGu -5' |
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9047 | 3' | -58.4 | NC_002512.2 | + | 29526 | 0.66 | 0.885095 |
Target: 5'- -cCCUCACCCcCCGCcccgucCCCCCGu -3' miRNA: 3'- uuGGAGUGGGuGGUGccuuu-GGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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