miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 3' -58.4 NC_002512.2 + 35986 0.66 0.871317
Target:  5'- cGAUC-CGCCgACCGCGGcGACCCgCu -3'
miRNA:   3'- -UUGGaGUGGgUGGUGCCuUUGGGgGu -5'
9047 3' -58.4 NC_002512.2 + 74507 0.66 0.885095
Target:  5'- gGACCUCGCCaGCCucGCGGu--CCCgCCu -3'
miRNA:   3'- -UUGGAGUGGgUGG--UGCCuuuGGG-GGu -5'
9047 3' -58.4 NC_002512.2 + 108164 0.66 0.878308
Target:  5'- gGGCCUCGuCagCAUCACGGucGCCCCg- -3'
miRNA:   3'- -UUGGAGU-Gg-GUGGUGCCuuUGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 7635 0.66 0.878308
Target:  5'- aGGCCaUCacgagACCCGCCACGGcGACgaaggacgcggCCCCGa -3'
miRNA:   3'- -UUGG-AG-----UGGGUGGUGCCuUUG-----------GGGGU- -5'
9047 3' -58.4 NC_002512.2 + 55461 0.66 0.864126
Target:  5'- cACCgugguaGCCC-CgACGGAGGCCCCg- -3'
miRNA:   3'- uUGGag----UGGGuGgUGCCUUUGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 61758 0.66 0.856739
Target:  5'- cAGCC-C-CUCGCCGCGGccGGGCCCCUc -3'
miRNA:   3'- -UUGGaGuGGGUGGUGCC--UUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 2409 0.66 0.864126
Target:  5'- uACCUC-CUCGCgGcCGGccGCCCCCGg -3'
miRNA:   3'- uUGGAGuGGGUGgU-GCCuuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 107908 0.66 0.864126
Target:  5'- -uCCUCucguCCCGCCggcggGCGGGGACCCg-- -3'
miRNA:   3'- uuGGAGu---GGGUGG-----UGCCUUUGGGggu -5'
9047 3' -58.4 NC_002512.2 + 9558 0.66 0.871317
Target:  5'- aGGCCgUCcgGCCC-CC-CGGAGcccgGCCCCCGg -3'
miRNA:   3'- -UUGG-AG--UGGGuGGuGCCUU----UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 2682 0.66 0.871317
Target:  5'- cGCCUCcuggUCCGCgCGCGGGAGcgccugccgcuCCCCCGg -3'
miRNA:   3'- uUGGAGu---GGGUG-GUGCCUUU-----------GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 113700 0.66 0.891672
Target:  5'- uGCCUgGCCCGCagCGCGuGGAACUcgCCCGg -3'
miRNA:   3'- uUGGAgUGGGUG--GUGC-CUUUGG--GGGU- -5'
9047 3' -58.4 NC_002512.2 + 97318 0.66 0.871317
Target:  5'- uGGCCgCGCCCGCCggggucgaggGCGGAGaggccgacggcGCCgCCCGc -3'
miRNA:   3'- -UUGGaGUGGGUGG----------UGCCUU-----------UGG-GGGU- -5'
9047 3' -58.4 NC_002512.2 + 134745 0.66 0.878308
Target:  5'- -uCCUCgACCCGCCGgGGcGGACCgUCCGg -3'
miRNA:   3'- uuGGAG-UGGGUGGUgCC-UUUGG-GGGU- -5'
9047 3' -58.4 NC_002512.2 + 71383 0.66 0.85599
Target:  5'- cGCUggCGCagGCCGCGGAAguccugcGCCCCCGc -3'
miRNA:   3'- uUGGa-GUGggUGGUGCCUU-------UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 29526 0.66 0.885095
Target:  5'- -cCCUCACCCcCCGCcccgucCCCCCGu -3'
miRNA:   3'- uuGGAGUGGGuGGUGccuuu-GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 153841 0.66 0.891672
Target:  5'- cGCUaCGCUCGCCAaugGGAuACCCUCAa -3'
miRNA:   3'- uUGGaGUGGGUGGUg--CCUuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 8285 0.66 0.871317
Target:  5'- -uCCUCGCCguCCACc--GACCCCCc -3'
miRNA:   3'- uuGGAGUGGguGGUGccuUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 37198 0.66 0.878308
Target:  5'- cGGCCUCggcGCgCCGCCACaccu-CCCCCAg -3'
miRNA:   3'- -UUGGAG---UG-GGUGGUGccuuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 76822 0.66 0.891024
Target:  5'- cGCCUCGaCCGCCGacccgacCGGGAccGCUCCCGc -3'
miRNA:   3'- uUGGAGUgGGUGGU-------GCCUU--UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 121352 0.66 0.864126
Target:  5'- gGACCUUcUCCGCCGuCGGG--UCCCCGg -3'
miRNA:   3'- -UUGGAGuGGGUGGU-GCCUuuGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.