miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 3' -58.4 NC_002512.2 + 1502 0.67 0.822893
Target:  5'- aAACCUCACCCACUgguCGGuuucguucuucguuCCCCUu -3'
miRNA:   3'- -UUGGAGUGGGUGGu--GCCuuu-----------GGGGGu -5'
9047 3' -58.4 NC_002512.2 + 1614 0.69 0.745908
Target:  5'- -cCCUCuCCCACCcgguccGCGGucagucGCCCCCGc -3'
miRNA:   3'- uuGGAGuGGGUGG------UGCCuu----UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 2409 0.66 0.864126
Target:  5'- uACCUC-CUCGCgGcCGGccGCCCCCGg -3'
miRNA:   3'- uUGGAGuGGGUGgU-GCCuuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 2682 0.66 0.871317
Target:  5'- cGCCUCcuggUCCGCgCGCGGGAGcgccugccgcuCCCCCGg -3'
miRNA:   3'- uUGGAGu---GGGUG-GUGCCUUU-----------GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 3369 0.66 0.85599
Target:  5'- aGACCgucCGCCCGcuCCGCGGggcccacAggUCCCCAg -3'
miRNA:   3'- -UUGGa--GUGGGU--GGUGCC-------UuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 4359 0.68 0.800078
Target:  5'- cGCCUCccgccguCCCGuCCGCGaagcccGGGACCCCCGc -3'
miRNA:   3'- uUGGAGu------GGGU-GGUGC------CUUUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 6128 0.69 0.727019
Target:  5'- cGACCUCGCUguCguCGGAcacGACCUCCAc -3'
miRNA:   3'- -UUGGAGUGGguGguGCCU---UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 7513 0.7 0.698133
Target:  5'- gAGCCagaGCCCGCCGgGGAAggcgGCCCCg- -3'
miRNA:   3'- -UUGGag-UGGGUGGUgCCUU----UGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 7635 0.66 0.878308
Target:  5'- aGGCCaUCacgagACCCGCCACGGcGACgaaggacgcggCCCCGa -3'
miRNA:   3'- -UUGG-AG-----UGGGUGGUGCCuUUG-----------GGGGU- -5'
9047 3' -58.4 NC_002512.2 + 8285 0.66 0.871317
Target:  5'- -uCCUCGCCguCCACc--GACCCCCc -3'
miRNA:   3'- uuGGAGUGGguGGUGccuUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 8766 0.67 0.817086
Target:  5'- -uCCUCAgC-GCCGuCGGAAGCUCCCGa -3'
miRNA:   3'- uuGGAGUgGgUGGU-GCCUUUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 9558 0.66 0.871317
Target:  5'- aGGCCgUCcgGCCC-CC-CGGAGcccgGCCCCCGg -3'
miRNA:   3'- -UUGG-AG--UGGGuGGuGCCUU----UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 10023 0.7 0.678603
Target:  5'- cGGCCUCgucACCCGuCCGCGauccGCCCCCGg -3'
miRNA:   3'- -UUGGAG---UGGGU-GGUGCcuu-UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 12761 0.67 0.849163
Target:  5'- gGGCCcgcugCugCCGCCGCaGGAcucggcggcGCCCCCGc -3'
miRNA:   3'- -UUGGa----GugGGUGGUGcCUU---------UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 13653 0.67 0.841403
Target:  5'- cGACCgu-CUCGCCGCGGcuccAGCUCCCGg -3'
miRNA:   3'- -UUGGaguGGGUGGUGCCu---UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 14751 0.67 0.841403
Target:  5'- cGCCUCcCCCGUCGCGcGGACCCCg- -3'
miRNA:   3'- uUGGAGuGGGUGGUGCcUUUGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 15965 0.72 0.56051
Target:  5'- cGACUcgCACUCGCCGCGGucgaucuCCCCCGg -3'
miRNA:   3'- -UUGGa-GUGGGUGGUGCCuuu----GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 19027 0.67 0.825358
Target:  5'- gGGCacgCACUCGaucUCGCGGAgcAGCCCCCAg -3'
miRNA:   3'- -UUGga-GUGGGU---GGUGCCU--UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 19482 0.71 0.62929
Target:  5'- cGCCUC-CCCGCCGCGu---UCCCCAc -3'
miRNA:   3'- uUGGAGuGGGUGGUGCcuuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 21190 0.69 0.707824
Target:  5'- gAGCCccgggUACCCGuCCAgGGAcagcGGCCCCCGg -3'
miRNA:   3'- -UUGGa----GUGGGU-GGUgCCU----UUGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.