miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 3' -58.4 NC_002512.2 + 146473 1.06 0.004115
Target:  5'- gAACCUCACCCACCACGGAAACCCCCAc -3'
miRNA:   3'- -UUGGAGUGGGUGGUGCCUUUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 97873 0.76 0.35034
Target:  5'- gGACC-CGCCCGCCgACGcGAGAUCCCCc -3'
miRNA:   3'- -UUGGaGUGGGUGG-UGC-CUUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 43658 0.75 0.386996
Target:  5'- gGACCUCGCCCucgguggcgGCCGCGGcgucaucggcgcccGAGCCCuCCAg -3'
miRNA:   3'- -UUGGAGUGGG---------UGGUGCC--------------UUUGGG-GGU- -5'
9047 3' -58.4 NC_002512.2 + 39003 0.75 0.38942
Target:  5'- cGCCUCGCCCcgcgaCGCGGGgaaAGCCCCCc -3'
miRNA:   3'- uUGGAGUGGGug---GUGCCU---UUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 190944 0.75 0.417576
Target:  5'- aGACCcgggcgcacgcgggCGCCCGCCGCGGcgGCCCCUc -3'
miRNA:   3'- -UUGGa-------------GUGGGUGGUGCCuuUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 128900 0.74 0.456681
Target:  5'- gGGCCUggcgaucCGCCCGCCGCGGGAGCUgaCCGa -3'
miRNA:   3'- -UUGGA-------GUGGGUGGUGCCUUUGGg-GGU- -5'
9047 3' -58.4 NC_002512.2 + 134596 0.73 0.475591
Target:  5'- cGCCUCGUCCGCCgACGGGAACCCg-- -3'
miRNA:   3'- uUGGAGUGGGUGG-UGCCUUUGGGggu -5'
9047 3' -58.4 NC_002512.2 + 28049 0.73 0.493957
Target:  5'- gAGCU--GCCgGCCGCGGAAggaGCCCCCGg -3'
miRNA:   3'- -UUGGagUGGgUGGUGCCUU---UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 140129 0.73 0.493957
Target:  5'- uGCCcgcgCGCCgACCGCGGGAACCUCUc -3'
miRNA:   3'- uUGGa---GUGGgUGGUGCCUUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 72740 0.73 0.50326
Target:  5'- cGGCCcgcCGCCCGCCcCGGGcccgccgccGACCCCCGa -3'
miRNA:   3'- -UUGGa--GUGGGUGGuGCCU---------UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 70837 0.72 0.531607
Target:  5'- cGCCUCGCCCcgggacgagauGCCGCGGAGAagucgucgguCCgCCCGg -3'
miRNA:   3'- uUGGAGUGGG-----------UGGUGCCUUU----------GG-GGGU- -5'
9047 3' -58.4 NC_002512.2 + 64229 0.72 0.531607
Target:  5'- gGACCUCGgCCugCG-GGAAgGCCCCCGa -3'
miRNA:   3'- -UUGGAGUgGGugGUgCCUU-UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 166174 0.72 0.531607
Target:  5'- gGACCUCAgCUACaa-GGAGAUCCCCGu -3'
miRNA:   3'- -UUGGAGUgGGUGgugCCUUUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 144131 0.72 0.531607
Target:  5'- uAUCUCGgCCaggucgGCCGCGGAGACCCCgAg -3'
miRNA:   3'- uUGGAGUgGG------UGGUGCCUUUGGGGgU- -5'
9047 3' -58.4 NC_002512.2 + 134103 0.72 0.550822
Target:  5'- -cCCggCGCCUACCGCucGGAcGCCCCCGu -3'
miRNA:   3'- uuGGa-GUGGGUGGUG--CCUuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 63079 0.72 0.56051
Target:  5'- cGCUUCGCCCACCACc---ACCUCCAg -3'
miRNA:   3'- uUGGAGUGGGUGGUGccuuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 15965 0.72 0.56051
Target:  5'- cGACUcgCACUCGCCGCGGucgaucuCCCCCGg -3'
miRNA:   3'- -UUGGa-GUGGGUGGUGCCuuu----GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 150864 0.72 0.56051
Target:  5'- aAGCCaCGCCCACUcaACGGAcuGACaCCCCGa -3'
miRNA:   3'- -UUGGaGUGGGUGG--UGCCU--UUG-GGGGU- -5'
9047 3' -58.4 NC_002512.2 + 104730 0.72 0.570244
Target:  5'- cACCgucCGCCCGCCcCcGggGCCCCCGc -3'
miRNA:   3'- uUGGa--GUGGGUGGuGcCuuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 205186 0.72 0.580019
Target:  5'- -cCCUCGCCCGCguCcucgacGAGACCCCCGc -3'
miRNA:   3'- uuGGAGUGGGUGguGc-----CUUUGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.